JIVE Matim + vs. -

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Last updated: 2024-11-25

Checks: 7 0

Knit directory: madi-biostat-project3-SDY8003-Thailand/

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These are the previous versions of the repository in which changes were made to the R Markdown (analysis/jive_matimpm.Rmd) and HTML (docs/jive_matimpm.html) files. If you’ve configured a remote Git repository (see ?wflow_git_remote), click on the hyperlinks in the table below to view the files as they were in that past version.

File	Version	Author	Date	Message
Rmd	f00f669	alecbuetow	2024-11-25	explained why JIVE picks # ranks
html	b9c3e73	alecbuetow	2024-11-25	saved progress to switch branches
Rmd	4a21c1a	alecbuetow	2024-11-20	corrected innapropriate warning
html	4a21c1a	alecbuetow	2024-11-20	corrected innapropriate warning
html	69c2601	alecbuetow	2024-11-20	corrected duplicate JIVE
Rmd	9f50e73	alecbuetow	2024-11-20	more polish
html	9f50e73	alecbuetow	2024-11-20	more polish
Rmd	df305a9	alecbuetow	2024-11-20	polish
Rmd	0cc81b6	alecbuetow	2024-11-20	made changes to loading extraction in JIVE and PCA correlation circle:
html	0cc81b6	alecbuetow	2024-11-20	made changes to loading extraction in JIVE and PCA correlation circle:
Rmd	366e256	alecbuetow	2024-11-19	added loading plots to JIVE
html	366e256	alecbuetow	2024-11-19	added loading plots to JIVE
Rmd	f3de555	alecbuetow	2024-11-12	many changes
Rmd	65b4e9d	alecbuetow	2024-11-05	made fisher test more consistent
Rmd	bde08e9	alecbuetow	2024-11-04	Add large file with Git LFS
html	bde08e9	alecbuetow	2024-11-04	Add large file with Git LFS
Rmd	d6f0da4	f006zvn1	2024-10-29	saving progress, testing new ssh key
html	d6f0da4	f006zvn1	2024-10-29	saving progress, testing new ssh key
Rmd	f667132	f006zvn1	2024-10-22	added standardized data section
html	3eb4ec7	f006zvn1	2024-10-21	fixed jitter
Rmd	b70ef48	f006zvn1	2024-10-16	corrected typos
html	b70ef48	f006zvn1	2024-10-16	corrected typos
Rmd	fc9b419	f006zvn1	2024-10-16	renamed chunks to make pngs neater
html	fc9b419	f006zvn1	2024-10-16	renamed chunks to make pngs neater
Rmd	19a62eb	f006zvn1	2024-10-16	fixed categorical labels
html	19a62eb	f006zvn1	2024-10-16	fixed categorical labels
Rmd	3a356e9	f006zvn1	2024-10-16	JIVE updated with covariates
html	3a356e9	f006zvn1	2024-10-16	JIVE updated with covariates
Rmd	ae2edc0	f006zvn1	2024-10-16	JIVE changes
html	ae2edc0	f006zvn1	2024-10-16	JIVE changes

---

Dataset

Unstandardized

Joint and Individual Variance Explained (JIVE):

Analytes were categorized into IgG, Fc Receptors, and Effector Functions, with data from each category analyzed using the JIVE algorithm to decompose shared (joint) and unique (individual) variation components.

Matrix Rank (number of pricincipal components selected) was determined by significance testing as part of the JIVE algorithm. Principal components that explained a statistically significant amount of variance at α = 0.05 were retained, while all others were excluded.

Vaccinated

Joint Matrix Rank: 2

Individual Matrices Rank:

• IgG: 5

• FcR: 4

• Effector Functions: 2

Original Matrices Rank:

• IgG: 33

• FcR: 12

• Effector Functions: 16

Variation Explained

Past versions of unstandardized_vaccinated_jive-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Joint PCA

Past versions of unstandardized_vaccinated_jive-2.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Joint + Individual PCA

Past versions of unstandardized_vaccinated_jive-3.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

PC Loadings

Joint

Past versions of unstandardized_vaccinated_loadings-1.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_vaccinated_loadings-2.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

IgG

Past versions of unstandardized_vaccinated_loadings-3.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_vaccinated_loadings-4.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

FcR

Past versions of unstandardized_vaccinated_loadings-5.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_vaccinated_loadings-6.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Effector

Past versions of unstandardized_vaccinated_loadings-7.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_vaccinated_loadings-8.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Classification

Past versions of unstandardized_vaccinated_classification-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Subjects above the line are classified into one group (‘Above at Vaccinated Visit’) as are subjects below the line (‘Below at Vaccinated Visit’)

Boosted

Joint Matrix Rank: 1

Individual Matrices Rank:

• IgG: 3

• FcR: 2

• Effector Functions: 1

Original Matrices Rank:

• IgG: 33

• FcR: 12

• Effector Functions: 16

Variation Explained

Past versions of unstandardized_boosted_jive-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Joint PCA

Past versions of unstandardized_boosted_jive-2.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Joint + Individual PCA

Past versions of unstandardized_boosted_jive-3.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

PC Loadings

Joint

Past versions of unstandardized_boosted_loadings-1.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_boosted_loadings-2.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

IgG

Past versions of unstandardized_boosted_loadings-3.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_boosted_loadings-4.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

FcR

Past versions of unstandardized_boosted_loadings-5.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_boosted_loadings-6.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Effector

Past versions of unstandardized_boosted_loadings-7.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of unstandardized_boosted_loadings-8.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Classification

Past versions of unstandardized_boosted_classification-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Subjects above the line are classified into one group (‘Above at Boosted Visit’) as are subjects below the line (‘Below at Boosted Visit’)

Classification Analysis:

Subject classifications were derived from clusters appearing in the JIVE plots above. If no latent clusters were evident, then subject classifications are unavailable.

Vaccinated vs Boosted Classification
	Below	Above
Below	31	11
Above	0	40

Correlation = 0.761

Vaccinated

Classification by Arm
Arm	Classification	Number of Subjects
maternal Tdap - infant wp	Below	19
maternal Tdap - infant wp	Above	22
maternal Tdap - infant wp	NA	1
No maternal vaccination - infant wp	Below	25
No maternal vaccination - infant wp	Above	22
No maternal vaccination - infant wp	NA	3

Subjects who are missing all data within any given domain (IgG, FcR, or Effector) cannot be classified and are marked as NA.

Birth Weight

Past versions of unstandardized_classification_analysis-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

CMV Seropositivity

Classification by CMV Seropositivity
	Below	Above
No	30	0
Yes	11	40
Unknown	3	4

P-Value = 4.16e-13

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Infant Sex

Classification by Infant Sex
	Below	Above
Male	23	25
Female	21	19

P-Value = 0.831

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Delivery Mode

Classification by Delivery Mode
	Below	Above
Vaginal	18	20
Caesarian	26	24

P-Value = 0.83

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Parity

Classification by Parity
	Below	Above
0	19	23
1	20	14
2	4	6
3	1	1

P-Value = 0.655

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gravidity

Classification by Gravidity
	Below	Above
1	16	21
2	20	15
3	7	5
4	1	2
5	0	1

P-Value = 0.576

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gestational Age at Vaccine

Past versions of unstandardized_classification_analysis-2.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Infant Interval Between Vaccination and Delivery Days

Past versions of unstandardized_classification_analysis-3.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Gestational Age at Delivery

Past versions of unstandardized_classification_analysis-4.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Maternal Age at Delivery

Past versions of unstandardized_classification_analysis-5.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

IgG

DT_IgG

Past versions of unstandardized_classification_analysis-6.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_FHA_IgG

Past versions of unstandardized_classification_analysis-7.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PRN_IgG

Past versions of unstandardized_classification_analysis-8.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PT_IgG

Past versions of unstandardized_classification_analysis-9.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG

Past versions of unstandardized_classification_analysis-10.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG

Past versions of unstandardized_classification_analysis-11.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG

Past versions of unstandardized_classification_analysis-12.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG

Past versions of unstandardized_classification_analysis-13.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG

Past versions of unstandardized_classification_analysis-14.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG1

Past versions of unstandardized_classification_analysis-15.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG1

Past versions of unstandardized_classification_analysis-16.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG1

Past versions of unstandardized_classification_analysis-17.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG1

Past versions of unstandardized_classification_analysis-18.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG1

Past versions of unstandardized_classification_analysis-19.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG1

Past versions of unstandardized_classification_analysis-20.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG2

Past versions of unstandardized_classification_analysis-21.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG2

Past versions of unstandardized_classification_analysis-22.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG2

Past versions of unstandardized_classification_analysis-23.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG2

Past versions of unstandardized_classification_analysis-24.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG2

Past versions of unstandardized_classification_analysis-25.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG2

Past versions of unstandardized_classification_analysis-26.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG3

Past versions of unstandardized_classification_analysis-27.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG3

Past versions of unstandardized_classification_analysis-28.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG3

Past versions of unstandardized_classification_analysis-29.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG3

Past versions of unstandardized_classification_analysis-30.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG3

Past versions of unstandardized_classification_analysis-31.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG3

Past versions of unstandardized_classification_analysis-32.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG4

Past versions of unstandardized_classification_analysis-33.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG4

Past versions of unstandardized_classification_analysis-34.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG4

Past versions of unstandardized_classification_analysis-35.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG4

Past versions of unstandardized_classification_analysis-36.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG4

Past versions of unstandardized_classification_analysis-37.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG4

Past versions of unstandardized_classification_analysis-38.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FcR

DT_FcgR2a

Past versions of unstandardized_classification_analysis-39.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR2a

Past versions of unstandardized_classification_analysis-40.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR2a

Past versions of unstandardized_classification_analysis-41.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR2a

Past versions of unstandardized_classification_analysis-42.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR2a

Past versions of unstandardized_classification_analysis-43.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR2a

Past versions of unstandardized_classification_analysis-44.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_FcgR3b

Past versions of unstandardized_classification_analysis-45.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR3b

Past versions of unstandardized_classification_analysis-46.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR3b

Past versions of unstandardized_classification_analysis-47.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR3b

Past versions of unstandardized_classification_analysis-48.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR3b

Past versions of unstandardized_classification_analysis-49.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR3b

Past versions of unstandardized_classification_analysis-50.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Effector

DT_ADCD

Past versions of unstandardized_classification_analysis-51.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCD

Past versions of unstandardized_classification_analysis-52.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_ADCD

Past versions of unstandardized_classification_analysis-53.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCD

Past versions of unstandardized_classification_analysis-54.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCD

Past versions of unstandardized_classification_analysis-55.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCD

Past versions of unstandardized_classification_analysis-56.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADCP

Past versions of unstandardized_classification_analysis-57.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCP

Past versions of unstandardized_classification_analysis-58.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCP

Past versions of unstandardized_classification_analysis-59.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCP

Past versions of unstandardized_classification_analysis-60.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCP

Past versions of unstandardized_classification_analysis-61.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADNP

Past versions of unstandardized_classification_analysis-62.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADNP

Past versions of unstandardized_classification_analysis-63.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADNP

Past versions of unstandardized_classification_analysis-64.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADNP

Past versions of unstandardized_classification_analysis-65.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADNP

Past versions of unstandardized_classification_analysis-66.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Boosted

Classification by Arm
Arm	Classification	Number of Subjects
maternal Tdap - infant wp	Below	13
maternal Tdap - infant wp	Above	25
maternal Tdap - infant wp	NA	2
No maternal vaccination - infant wp	Below	20
No maternal vaccination - infant wp	Above	28
No maternal vaccination - infant wp	NA	0

Subjects who are missing all data within any given domain (IgG, FcR, or Effector) cannot be classified and are marked as NA.

Birth Weight

Past versions of unstandardized_classification_analysis-67.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

CMV Seropositivity

Classification by CMV Seropositivity
	Below	Above
No	31	1
Yes	1	52
Unknown	1	0

P-Value = 2.68e-21

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Infant Sex

Classification by Infant Sex
	Below	Above
Male	17	32
Female	16	21

P-Value = 0.503

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Delivery Mode

Classification by Delivery Mode
	Below	Above
Vaginal	16	20
Caesarian	17	33

P-Value = 0.373

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Parity

Classification by Parity
	Below	Above
0	12	28
1	16	18
2	4	6
3	1	1

P-Value = 0.441

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gravidity

Classification by Gravidity
	Below	Above
1	10	24
2	15	19
3	6	7
4	2	2
5	0	1

P-Value = 0.595

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gestational Age at Vaccine

Past versions of unstandardized_classification_analysis-68.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Infant Interval Between Vaccination and Delivery Days

Past versions of unstandardized_classification_analysis-69.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Gestational Age at Delivery

Past versions of unstandardized_classification_analysis-70.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Maternal Age at Delivery

Past versions of unstandardized_classification_analysis-71.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

IgG

DT_IgG

Past versions of unstandardized_classification_analysis-72.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_FHA_IgG

Past versions of unstandardized_classification_analysis-73.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PRN_IgG

Past versions of unstandardized_classification_analysis-74.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PT_IgG

Past versions of unstandardized_classification_analysis-75.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG

Past versions of unstandardized_classification_analysis-76.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG

Past versions of unstandardized_classification_analysis-77.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG

Past versions of unstandardized_classification_analysis-78.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG

Past versions of unstandardized_classification_analysis-79.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG

Past versions of unstandardized_classification_analysis-80.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG1

Past versions of unstandardized_classification_analysis-81.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG1

Past versions of unstandardized_classification_analysis-82.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG1

Past versions of unstandardized_classification_analysis-83.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG1

Past versions of unstandardized_classification_analysis-84.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG1

Past versions of unstandardized_classification_analysis-85.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG1

Past versions of unstandardized_classification_analysis-86.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG2

Past versions of unstandardized_classification_analysis-87.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG2

Past versions of unstandardized_classification_analysis-88.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG2

Past versions of unstandardized_classification_analysis-89.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG2

Past versions of unstandardized_classification_analysis-90.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG2

Past versions of unstandardized_classification_analysis-91.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG2

Past versions of unstandardized_classification_analysis-92.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG3

Past versions of unstandardized_classification_analysis-93.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG3

Past versions of unstandardized_classification_analysis-94.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG3

Past versions of unstandardized_classification_analysis-95.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG3

Past versions of unstandardized_classification_analysis-96.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG3

Past versions of unstandardized_classification_analysis-97.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG3

Past versions of unstandardized_classification_analysis-98.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG4

Past versions of unstandardized_classification_analysis-99.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG4

Past versions of unstandardized_classification_analysis-100.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG4

Past versions of unstandardized_classification_analysis-101.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG4

Past versions of unstandardized_classification_analysis-102.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG4

Past versions of unstandardized_classification_analysis-103.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG4

Past versions of unstandardized_classification_analysis-104.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FcR

DT_FcgR2a

Past versions of unstandardized_classification_analysis-105.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR2a

Past versions of unstandardized_classification_analysis-106.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR2a

Past versions of unstandardized_classification_analysis-107.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR2a

Past versions of unstandardized_classification_analysis-108.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR2a

Past versions of unstandardized_classification_analysis-109.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR2a

Past versions of unstandardized_classification_analysis-110.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_FcgR3b

Past versions of unstandardized_classification_analysis-111.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR3b

Past versions of unstandardized_classification_analysis-112.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR3b

Past versions of unstandardized_classification_analysis-113.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR3b

Past versions of unstandardized_classification_analysis-114.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR3b

Past versions of unstandardized_classification_analysis-115.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR3b

Past versions of unstandardized_classification_analysis-116.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Effector

DT_ADCD

Past versions of unstandardized_classification_analysis-117.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCD

Past versions of unstandardized_classification_analysis-118.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_ADCD

Past versions of unstandardized_classification_analysis-119.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCD

Past versions of unstandardized_classification_analysis-120.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCD

Past versions of unstandardized_classification_analysis-121.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCD

Past versions of unstandardized_classification_analysis-122.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADCP

Past versions of unstandardized_classification_analysis-123.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCP

Past versions of unstandardized_classification_analysis-124.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCP

Past versions of unstandardized_classification_analysis-125.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCP

Past versions of unstandardized_classification_analysis-126.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCP

Past versions of unstandardized_classification_analysis-127.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADNP

Past versions of unstandardized_classification_analysis-128.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADNP

Past versions of unstandardized_classification_analysis-129.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADNP

Past versions of unstandardized_classification_analysis-130.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADNP

Past versions of unstandardized_classification_analysis-131.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADNP

Past versions of unstandardized_classification_analysis-132.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Citations:

Michael J. O’Connell, Eric F. Lock, R.JIVE for exploration of multi-source molecular data, Bioinformatics, Volume 32, Issue 18, September 2016, Pages 2877–2879, https://doi.org/10.1093/bioinformatics/btw324

Eric F. Lock, Katherine A. Hoadley, J. S. Marron, Andrew B. Nobel, “Joint and individual variation explained (JIVE) for integrated analysis of multiple data types,” The Annals of Applied Statistics, Ann. Appl. Stat. 7(1), 523-542, (March 2013), https://doi.org/10.1214/12-AOAS597

Standardized by Total IgG

Joint and Individual Variance Explained (JIVE):

Analytes were categorized into IgG, Fc Receptors, and Effector Functions, with data from each category analyzed using the JIVE algorithm to decompose shared (joint) and unique (individual) variation components.

Matrix Rank (number of pricincipal components selected) was determined by significance testing as part of the JIVE algorithm. Principal components that explained a statistically significant amount of variance at α = 0.05 were retained, while all others were excluded.

Vaccinated

Joint Matrix Rank: 1

Individual Matrices Rank:

• IgG: 2

• FcR: 2

• Effector Functions: 1

Original Matrices Rank:

• IgG: 33

• FcR: 12

• Effector Functions: 16

Variation Explained

Past versions of standardized_vaccinated_jive-1.png

Version	Author	Date
bde08e9	alecbuetow	2024-11-04
d6f0da4	f006zvn1	2024-10-29

Joint PCA

Past versions of standardized_vaccinated_jive-2.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Joint + Individual PCA

Past versions of standardized_vaccinated_jive-3.png

Version	Author	Date
bde08e9	alecbuetow	2024-11-04
d6f0da4	f006zvn1	2024-10-29

PC Loadings

Joint

Past versions of standardized_vaccinated_loadings-1.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Past versions of standardized_vaccinated_loadings-2.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

IgG

Past versions of standardized_vaccinated_loadings-3.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Past versions of standardized_vaccinated_loadings-4.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

FcR

Past versions of standardized_vaccinated_loadings-5.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Past versions of standardized_vaccinated_loadings-6.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Effector

Past versions of standardized_vaccinated_loadings-7.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of standardized_vaccinated_loadings-8.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Classification

Past versions of standardized_vaccinated_classification-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Boosted

Joint Matrix Rank: 2

Individual Matrices Rank:

• IgG: 1

• FcR: 1

• Effector Functions: 2

Original Matrices Rank:

• IgG: 33

• FcR: 12

• Effector Functions: 16

Variation Explained

Past versions of standardized_boosted_jive-1.png

Version	Author	Date
bde08e9	alecbuetow	2024-11-04
d6f0da4	f006zvn1	2024-10-29

Joint PCA

Past versions of standardized_boosted_jive-2.png

Version	Author	Date
bde08e9	alecbuetow	2024-11-04
d6f0da4	f006zvn1	2024-10-29

Joint + Individual PCA

Past versions of standardized_boosted_jive-3.png

Version	Author	Date
bde08e9	alecbuetow	2024-11-04
d6f0da4	f006zvn1	2024-10-29

PC Loadings

Joint

Past versions of standardized_boosted_loadings-1.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of standardized_boosted_loadings-2.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

IgG

Past versions of standardized_boosted_loadings-3.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of standardized_boosted_loadings-4.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

FcR

Past versions of standardized_boosted_loadings-5.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Past versions of standardized_boosted_loadings-6.png

Version	Author	Date
366e256	alecbuetow	2024-11-19

Effector

Past versions of standardized_boosted_loadings-7.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Past versions of standardized_boosted_loadings-8.png

Version	Author	Date
9f50e73	alecbuetow	2024-11-20
0cc81b6	alecbuetow	2024-11-20
366e256	alecbuetow	2024-11-19

Classification

Past versions of standardized_boosted_classification-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Classification Analysis:

Subject classifications were derived from clusters appearing in the JIVE plots above. If no latent clusters were evident, then subject classifications are unavailable.

Vaccinated vs Boosted Classification
	Below	Above
Below	0	0
Above	0	0

Correlation = NA

Vaccinated

Past versions of standardized_classification_analysis-1.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Subjects who are missing all data within any given domain (IgG, FcR, or Effector) cannot be classified and are marked as NA.

Birth Weight

Past versions of standardized_classification_analysis-2.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

CMV Seropositivity

Classification by CMV Seropositivity
	Below	Above
No	0	0
Yes	0	0
Unknown	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Infant Sex

Classification by Infant Sex
	Below	Above
Male	0	0
Female	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Delivery Mode

Classification by Delivery Mode
	Below	Above
Vaginal	0	0
Caesarian	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Parity

Classification by Parity
	Below	Above
0	0	0
1	0	0
2	0	0
3	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gravidity

Classification by Gravidity
	Below	Above
1	0	0
2	0	0
3	0	0
4	0	0
5	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gestational Age at Vaccine

Past versions of standardized_classification_analysis-3.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Infant Interval Between Vaccination and Delivery Days

Past versions of standardized_classification_analysis-4.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Gestational Age at Delivery

Past versions of standardized_classification_analysis-5.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Maternal Age at Delivery

Past versions of standardized_classification_analysis-6.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

IgG

DT_IgG1

Past versions of standardized_classification_analysis-7.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG2

Past versions of standardized_classification_analysis-8.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG3

Past versions of standardized_classification_analysis-9.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG4

Past versions of standardized_classification_analysis-10.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG1

Past versions of standardized_classification_analysis-11.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG2

Past versions of standardized_classification_analysis-12.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG3

Past versions of standardized_classification_analysis-13.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG4

Past versions of standardized_classification_analysis-14.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG1

Past versions of standardized_classification_analysis-15.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG2

Past versions of standardized_classification_analysis-16.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG3

Past versions of standardized_classification_analysis-17.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG4

Past versions of standardized_classification_analysis-18.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG1

Past versions of standardized_classification_analysis-19.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG2

Past versions of standardized_classification_analysis-20.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG3

Past versions of standardized_classification_analysis-21.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG4

Past versions of standardized_classification_analysis-22.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG1

Past versions of standardized_classification_analysis-23.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG2

Past versions of standardized_classification_analysis-24.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG3

Past versions of standardized_classification_analysis-25.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG4

Past versions of standardized_classification_analysis-26.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG1

Past versions of standardized_classification_analysis-27.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG2

Past versions of standardized_classification_analysis-28.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG3

Past versions of standardized_classification_analysis-29.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG4

Past versions of standardized_classification_analysis-30.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG

Past versions of standardized_classification_analysis-31.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_FHA_IgG

Past versions of standardized_classification_analysis-32.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PRN_IgG

Past versions of standardized_classification_analysis-33.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PT_IgG

Past versions of standardized_classification_analysis-34.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG

Past versions of standardized_classification_analysis-35.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG

Past versions of standardized_classification_analysis-36.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG

Past versions of standardized_classification_analysis-37.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG

Past versions of standardized_classification_analysis-38.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG

Past versions of standardized_classification_analysis-39.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FcR

DT_FcgR2a

Past versions of standardized_classification_analysis-40.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_FcgR3b

Past versions of standardized_classification_analysis-41.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR2a

Past versions of standardized_classification_analysis-42.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR3b

Past versions of standardized_classification_analysis-43.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR2a

Past versions of standardized_classification_analysis-44.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR3b

Past versions of standardized_classification_analysis-45.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR2a

Past versions of standardized_classification_analysis-46.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR3b

Past versions of standardized_classification_analysis-47.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR2a

Past versions of standardized_classification_analysis-48.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR3b

Past versions of standardized_classification_analysis-49.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR2a

Past versions of standardized_classification_analysis-50.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR3b

Past versions of standardized_classification_analysis-51.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Effector

DT_ADCD

Past versions of standardized_classification_analysis-52.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADCP

Past versions of standardized_classification_analysis-53.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADNP

Past versions of standardized_classification_analysis-54.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCD

Past versions of standardized_classification_analysis-55.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCP

Past versions of standardized_classification_analysis-56.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADNP

Past versions of standardized_classification_analysis-57.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_ADCD

Past versions of standardized_classification_analysis-58.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCD

Past versions of standardized_classification_analysis-59.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCP

Past versions of standardized_classification_analysis-60.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADNP

Past versions of standardized_classification_analysis-61.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCD

Past versions of standardized_classification_analysis-62.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCP

Past versions of standardized_classification_analysis-63.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADNP

Past versions of standardized_classification_analysis-64.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCD

Past versions of standardized_classification_analysis-65.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCP

Past versions of standardized_classification_analysis-66.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADNP

Past versions of standardized_classification_analysis-67.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Boosted

Past versions of standardized_classification_analysis-68.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

Subjects who are missing all data within any given domain (IgG, FcR, or Effector) cannot be classified and are marked as NA.

Birth Weight

Past versions of standardized_classification_analysis-69.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

CMV Seropositivity

Classification by CMV Seropositivity
	Below	Above
No	0	0
Yes	0	0
Unknown	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Infant Sex

Classification by Infant Sex
	Below	Above
Male	0	0
Female	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Delivery Mode

Classification by Delivery Mode
	Below	Above
Vaginal	0	0
Caesarian	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Parity

Classification by Parity
	Below	Above
0	0	0
1	0	0
2	0	0
3	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gravidity

Classification by Gravidity
	Below	Above
1	0	0
2	0	0
3	0	0
4	0	0
5	0	0

P-Value = NA

P-Values are calculated from Fisher’s Exact Test with no FDR correction.

Gestational Age at Vaccine

Past versions of standardized_classification_analysis-70.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Infant Interval Between Vaccination and Delivery Days

Past versions of standardized_classification_analysis-71.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Gestational Age at Delivery

Past versions of standardized_classification_analysis-72.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Maternal Age at Delivery

Past versions of standardized_classification_analysis-73.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

IgG

DT_IgG1

Past versions of standardized_classification_analysis-74.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG2

Past versions of standardized_classification_analysis-75.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG3

Past versions of standardized_classification_analysis-76.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG4

Past versions of standardized_classification_analysis-77.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG1

Past versions of standardized_classification_analysis-78.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG2

Past versions of standardized_classification_analysis-79.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG3

Past versions of standardized_classification_analysis-80.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG4

Past versions of standardized_classification_analysis-81.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG1

Past versions of standardized_classification_analysis-82.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG2

Past versions of standardized_classification_analysis-83.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG3

Past versions of standardized_classification_analysis-84.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG4

Past versions of standardized_classification_analysis-85.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG1

Past versions of standardized_classification_analysis-86.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG2

Past versions of standardized_classification_analysis-87.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG3

Past versions of standardized_classification_analysis-88.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG4

Past versions of standardized_classification_analysis-89.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG1

Past versions of standardized_classification_analysis-90.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG2

Past versions of standardized_classification_analysis-91.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG3

Past versions of standardized_classification_analysis-92.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG4

Past versions of standardized_classification_analysis-93.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG1

Past versions of standardized_classification_analysis-94.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG2

Past versions of standardized_classification_analysis-95.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG3

Past versions of standardized_classification_analysis-96.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG4

Past versions of standardized_classification_analysis-97.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_IgG

Past versions of standardized_classification_analysis-98.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_FHA_IgG

Past versions of standardized_classification_analysis-99.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PRN_IgG

Past versions of standardized_classification_analysis-100.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

ELISA_PT_IgG

Past versions of standardized_classification_analysis-101.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_IgG

Past versions of standardized_classification_analysis-102.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_IgG

Past versions of standardized_classification_analysis-103.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_IgG

Past versions of standardized_classification_analysis-104.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_IgG

Past versions of standardized_classification_analysis-105.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_IgG

Past versions of standardized_classification_analysis-106.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FcR

DT_FcgR2a

Past versions of standardized_classification_analysis-107.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_FcgR3b

Past versions of standardized_classification_analysis-108.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR2a

Past versions of standardized_classification_analysis-109.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_FcgR3b

Past versions of standardized_classification_analysis-110.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR2a

Past versions of standardized_classification_analysis-111.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_FcgR3b

Past versions of standardized_classification_analysis-112.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR2a

Past versions of standardized_classification_analysis-113.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_FcgR3b

Past versions of standardized_classification_analysis-114.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR2a

Past versions of standardized_classification_analysis-115.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_FcgR3b

Past versions of standardized_classification_analysis-116.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR2a

Past versions of standardized_classification_analysis-117.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_FcgR3b

Past versions of standardized_classification_analysis-118.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Effector

DT_ADCD

Past versions of standardized_classification_analysis-119.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADCP

Past versions of standardized_classification_analysis-120.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

DT_ADNP

Past versions of standardized_classification_analysis-121.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCD

Past versions of standardized_classification_analysis-122.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADCP

Past versions of standardized_classification_analysis-123.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

FHA_ADNP

Past versions of standardized_classification_analysis-124.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

gB_ADCD

Past versions of standardized_classification_analysis-125.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCD

Past versions of standardized_classification_analysis-126.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADCP

Past versions of standardized_classification_analysis-127.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PRN_ADNP

Past versions of standardized_classification_analysis-128.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCD

Past versions of standardized_classification_analysis-129.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADCP

Past versions of standardized_classification_analysis-130.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

PT_ADNP

Past versions of standardized_classification_analysis-131.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCD

Past versions of standardized_classification_analysis-132.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADCP

Past versions of standardized_classification_analysis-133.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

TT_ADNP

Past versions of standardized_classification_analysis-134.png

Version	Author	Date
d6f0da4	f006zvn1	2024-10-29

P-Values are calculated from a two tailed T-Test with no FDR correction.

Citations:

Michael J. O’Connell, Eric F. Lock, R.JIVE for exploration of multi-source molecular data, Bioinformatics, Volume 32, Issue 18, September 2016, Pages 2877–2879, https://doi.org/10.1093/bioinformatics/btw324

Eric F. Lock, Katherine A. Hoadley, J. S. Marron, Andrew B. Nobel, “Joint and individual variation explained (JIVE) for integrated analysis of multiple data types,” The Annals of Applied Statistics, Ann. Appl. Stat. 7(1), 523-542, (March 2013), https://doi.org/10.1214/12-AOAS597

Session information

sessionInfo()

R version 4.4.2 (2024-10-31)
Platform: aarch64-apple-darwin20
Running under: macOS Sequoia 15.1.1

Matrix products: default
BLAS:   /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRblas.0.dylib 
LAPACK: /Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/lib/libRlapack.dylib;  LAPACK version 3.12.0

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

time zone: America/New_York
tzcode source: internal

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
 [1] broom_1.0.7        e1071_1.7-16       glue_1.8.0         RPostgres_1.4.7   
 [5] DT_0.33            data.table_1.16.2  DBI_1.2.3          RColorBrewer_1.1-3
 [9] ggforce_0.4.2      ggpubr_0.6.0       gt_0.11.1          knitr_1.48.1      
[13] here_1.0.1         magrittr_2.0.3     r.jive_2.4         lubridate_1.9.3   
[17] forcats_1.0.0      stringr_1.5.1      dplyr_1.1.4        purrr_1.0.2       
[21] readr_2.1.5        tidyr_1.3.1        tibble_3.2.1       ggplot2_3.5.1     
[25] tidyverse_2.0.0   

loaded via a namespace (and not attached):
 [1] tidyselect_1.2.1   farver_2.1.2       blob_1.2.4         bitops_1.0-9      
 [5] fastmap_1.2.0      tweenr_2.0.3       promises_1.3.0     digest_0.6.37     
 [9] timechange_0.3.0   lifecycle_1.0.4    compiler_4.4.2     rlang_1.1.4       
[13] sass_0.4.9         tools_4.4.2        utf8_1.2.4         yaml_2.3.10       
[17] ggsignif_0.6.4     labeling_0.4.3     htmlwidgets_1.6.4  bit_4.5.0         
[21] plyr_1.8.9         xml2_1.3.6         abind_1.4-8        KernSmooth_2.23-24
[25] workflowr_1.7.1    withr_3.0.1        grid_4.4.2         polyclip_1.10-7   
[29] fansi_1.0.6        git2r_0.33.0       caTools_1.18.3     colorspace_2.1-1  
[33] scales_1.3.0       gtools_3.9.5       MASS_7.3-61        cli_3.6.3         
[37] crayon_1.5.3       rmarkdown_2.28     generics_0.1.3     rstudioapi_0.16.0 
[41] reshape2_1.4.4     tzdb_0.4.0         commonmark_1.9.2   proxy_0.4-27      
[45] cachem_1.1.0       vctrs_0.6.5        jsonlite_1.8.9     carData_3.0-5     
[49] car_3.1-3          hms_1.1.3          bit64_4.5.2        rstatix_0.7.2     
[53] Formula_1.2-5      jquerylib_0.1.4    stringi_1.8.4      gtable_0.3.5      
[57] later_1.3.2        munsell_0.5.1      pillar_1.9.0       htmltools_0.5.8.1 
[61] gplots_3.2.0       R6_2.5.1           rprojroot_2.0.4    evaluate_1.0.1    
[65] markdown_1.13      highr_0.11         backports_1.5.0    httpuv_1.6.15     
[69] bslib_0.8.0        class_7.3-22       Rcpp_1.0.13        whisker_0.4.1     
[73] xfun_0.48          fs_1.6.4           pkgconfig_2.0.3