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/dartfs-hpc/rc/lab/L/LynchK/gemini_test/gemini3d/build/gemini.bin Process: 62 / 63 at 20261028T102112.479 ******************** input config **************** simulation directory: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug start year-month-day: 2026-02-10 start time: 36900.000 duration: 2400.000 output every: 60.000 gemini.f90: using input data files: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/simsize.h5 //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/simgrid.h5 //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/initial_conditions.h5 no neutral disturbance specified. Precipitation file input cadence (s): 60.000 Precipitation file input source directory: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/particles Electric field file input cadence (s): 60.000000000000000 Electric field file input source directory: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/fields no solar flux specified GLOW disabled MSISE00 enabled for neutral atmosphere calculations. EIA disabled Variable background neutral atmosphere disabled. Background precipitation has total energy flux and energy: 0.10000000000000001 1000.0000000000000 Parallel current calculation enabled. Inertial capacitance calculation type: 0 Diffusion solve type: 2 Milestone output disabled. Gravitaional drift terms disabled. Two-way coupling disabled. Lagrangian grid disabled Using default magnetic pole. **************** end input config *************** process grid (Number MPI processes) x2, x3: 32 2 Process:52 at process grid location: 20 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:58 at process grid location: 26 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:35 at process grid location: 3 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:38 at process grid location: 6 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:48 at process grid location: 16 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:37 at process grid location: 5 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:47 at process grid location: 15 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:36 at process grid location: 4 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:49 at process grid location: 17 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:61 at process grid location: 29 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:41 at process grid location: 9 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:45 at process grid location: 13 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:44 at process grid location: 12 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:34 at process grid location: 2 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:59 at process grid location: 27 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:50 at process grid location: 18 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:43 at process grid location: 11 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:60 at process grid location: 28 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:54 at process grid location: 22 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:40 at process grid location: 8 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:39 at process grid location: 7 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:55 at process grid location: 23 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:53 at process grid location: 21 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:46 at process grid location: 14 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:56 at process grid location: 24 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:20 at process grid location: 20 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:31 at process grid location: 31 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:51 at process grid location: 19 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:42 at process grid location: 10 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:4 at process grid location: 4 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:19 at process grid location: 19 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:11 at process grid location: 11 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:5 at process grid location: 5 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:0 at process grid location: 0 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:12 at process grid location: 12 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:62 at process grid location: 30 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:15 at process grid location: 15 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:10 at process grid location: 10 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:9 at process grid location: 9 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:24 at process grid location: 24 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:16 at process grid location: 16 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:8 at process grid location: 8 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:28 at process grid location: 28 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:26 at process grid location: 26 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:27 at process grid location: 27 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:14 at process grid location: 14 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:32 at process grid location: 0 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:57 at process grid location: 25 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:18 at process grid location: 18 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:1 at process grid location: 1 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:6 at process grid location: 6 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:22 at process grid location: 22 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:23 at process grid location: 23 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:7 at process grid location: 7 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:13 at process grid location: 13 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:17 at process grid location: 17 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:21 at process grid location: 21 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:63 at process grid location: 31 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:25 at process grid location: 25 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:2 at process grid location: 2 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:3 at process grid location: 3 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:29 at process grid location: 29 0 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:33 at process grid location: 1 1 get_subgrid_size: 3D run process grid (Number MPI processes) x2, x3: 32 2 Process:30 at process grid location: 30 0 get_subgrid_size: 3D run init_storage_root done enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... gather_grid_root done calc_coord_diffs_root done enforce_gridmpi_periodic done grid_check done Done with read_grid_in... !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! ! Restarting simulation from time: 2026 2 10 37620.000000000000 !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!! Treating the following file as initial conditions: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/20260210_37620.000000.h5 full duration: 2400.0000000000000 ; remaining simulation time: 1680.0000000000000 simulation start time: 720.00000000000000 //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/inputs/simsize.h5 input dimensions: 173 64 158 Target (output) grid structure dimensions: 173 64 158 NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... Sent ICs to workers in 2.559E-01 seconds. NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... Initial conditions (root): ------------------------ Min/max input density: 3.33E+08 1.10E+12 Min/max input velocity: -4.09E+01 1.18E+03 Min/max input temperature: 1.83E+02 4.95E+03 Min/max input electric potential: 0.00E+00 0.00E+00 Min/max input electric potential (full grid): 0.00E+00 0.00E+00 Recomputed initial dist. fields via pot2perpfield: gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 Priming inputdata NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... NOTE: Neutral background to be taken from empirical models... Setting Lagrangian-ness Recomputed initial fields including background (BGfieldLagrangian): 0.0000000000000000 0.0000000000000000 -1.9999999552965164E-002 -1.9999999552965164E-002 -9.9999997764825821E-003 -9.9999997764825821E-003 Recomputed initial drifts: 0.0000000000000000 0.0000000000000000 0.0000000000000000 0.0000000000000000 Starting main loop System sizes according to Phiall: 173 64 158 -->Number of user-defined output variables: 9 HDF5 Output file name: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/20260210_37620.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... Throttling dt to: 2.000E-06 Throttling dt to: 4.000E-06 Throttling dt to: 8.000E-06 Throttling dt to: 16.000E-06 Throttling dt to: 32.000E-06 Throttling dt to: 64.000E-06 Throttling dt to: 128.000E-06 Throttling dt to: 256.000E-06 Current time 2026-02-10 37620.000511; dt=0.000256 Throttling dt to: 512.000E-06 Throttling dt to: 1.024E-03 Throttling dt to: 2.048E-03 Throttling dt to: 4.096E-03 Throttling dt to: 8.192E-03 Throttling dt to: 16.384E-03 Throttling dt to: 32.768E-03 Throttling dt to: 65.536E-03 Current time 2026-02-10 37620.308388; dt=0.088660 Current time 2026-02-10 37621.195417; dt=0.088740 Current time 2026-02-10 37622.083239; dt=0.088816 Current time 2026-02-10 37622.971784; dt=0.088885 Current time 2026-02-10 37623.860990; dt=0.088949 Current time 2026-02-10 37624.750806; dt=0.089008 Current time 2026-02-10 37625.641195; dt=0.089065 Current time 2026-02-10 37626.532160; dt=0.089123 Current time 2026-02-10 37627.423703; dt=0.089180 Current time 2026-02-10 37628.315815; dt=0.089236 Current time 2026-02-10 37629.208471; dt=0.089288 Current time 2026-02-10 37630.101605; dt=0.089333 Current time 2026-02-10 37630.995142; dt=0.089370 Current time 2026-02-10 37631.888971; dt=0.089387 Current time 2026-02-10 37632.782871; dt=0.089395 Current time 2026-02-10 37633.676921; dt=0.089415 Current time 2026-02-10 37634.571236; dt=0.089447 Current time 2026-02-10 37635.465706; dt=0.089441 Current time 2026-02-10 37636.359973; dt=0.089414 Current time 2026-02-10 37637.253961; dt=0.089386 Current time 2026-02-10 37638.147652; dt=0.089355 Current time 2026-02-10 37639.041026; dt=0.089323 Current time 2026-02-10 37639.934067; dt=0.089289 Current time 2026-02-10 37640.826761; dt=0.089253 Current time 2026-02-10 37641.719097; dt=0.089217 Current time 2026-02-10 37642.611068; dt=0.089180 Current time 2026-02-10 37643.502667; dt=0.089143 Current time 2026-02-10 37644.393894; dt=0.089106 Current time 2026-02-10 37645.284749; dt=0.089069 Current time 2026-02-10 37646.175238; dt=0.089033 Current time 2026-02-10 37647.065370; dt=0.088997 Current time 2026-02-10 37647.955156; dt=0.088963 Current time 2026-02-10 37648.844600; dt=0.088929 Current time 2026-02-10 37649.733713; dt=0.088897 Current time 2026-02-10 37650.622515; dt=0.088867 Current time 2026-02-10 37651.511030; dt=0.088839 Current time 2026-02-10 37652.399287; dt=0.088815 Current time 2026-02-10 37653.287318; dt=0.088794 Current time 2026-02-10 37654.175061; dt=0.088756 Current time 2026-02-10 37655.062404; dt=0.088717 Current time 2026-02-10 37655.949387; dt=0.088684 Current time 2026-02-10 37656.836060; dt=0.088655 Current time 2026-02-10 37657.722474; dt=0.088631 Current time 2026-02-10 37658.608689; dt=0.088614 Current time 2026-02-10 37659.494766; dt=0.088604 Current time 2026-02-10 37660.380773; dt=0.088599 Current time 2026-02-10 37661.266776; dt=0.088602 Current time 2026-02-10 37662.152854; dt=0.088614 Current time 2026-02-10 37663.039091; dt=0.088633 Current time 2026-02-10 37663.925576; dt=0.088662 Current time 2026-02-10 37664.812405; dt=0.088701 Current time 2026-02-10 37665.699680; dt=0.088751 Current time 2026-02-10 37666.587509; dt=0.088808 Current time 2026-02-10 37667.475854; dt=0.088858 Current time 2026-02-10 37668.364766; dt=0.088921 Current time 2026-02-10 37669.254393; dt=0.089000 Current time 2026-02-10 37670.144917; dt=0.089099 Current time 2026-02-10 37671.036565; dt=0.089223 Current time 2026-02-10 37671.929610; dt=0.089376 Current time 2026-02-10 37672.824363; dt=0.089561 Current time 2026-02-10 37673.721154; dt=0.089782 Current time 2026-02-10 37674.620388; dt=0.090046 Current time 2026-02-10 37675.522531; dt=0.090360 Current time 2026-02-10 37676.428092; dt=0.090724 Current time 2026-02-10 37677.337611; dt=0.091148 Current time 2026-02-10 37678.251764; dt=0.091646 Current time 2026-02-10 37679.169640; dt=0.091809 Current time 2026-02-10 37680.000000; dt=0.003992 System sizes according to Phiall: 173 64 158 -->Number of user-defined output variables: 9 HDF5 Output file name: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/20260210_37680.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... Throttling dt to: 7.983E-03 Throttling dt to: 15.966E-03 Throttling dt to: 31.933E-03 Throttling dt to: 63.866E-03 Current time 2026-02-10 37680.670775; dt=0.091840 Current time 2026-02-10 37681.589230; dt=0.091849 Current time 2026-02-10 37682.507710; dt=0.091841 Current time 2026-02-10 37683.425991; dt=0.091816 Current time 2026-02-10 37684.343994; dt=0.091787 Current time 2026-02-10 37685.261680; dt=0.091753 Current time 2026-02-10 37686.179014; dt=0.091717 Current time 2026-02-10 37687.095872; dt=0.091652 Current time 2026-02-10 37688.011967; dt=0.091574 Current time 2026-02-10 37688.927284; dt=0.091497 Current time 2026-02-10 37689.841835; dt=0.091421 Current time 2026-02-10 37690.755634; dt=0.091347 Current time 2026-02-10 37691.668704; dt=0.091275 Current time 2026-02-10 37692.581076; dt=0.091207 Current time 2026-02-10 37693.492788; dt=0.091143 Current time 2026-02-10 37694.403880; dt=0.091083 Current time 2026-02-10 37695.314404; dt=0.091028 Current time 2026-02-10 37696.224408; dt=0.090979 Current time 2026-02-10 37697.133946; dt=0.090934 Current time 2026-02-10 37698.043072; dt=0.090896 Current time 2026-02-10 37698.951838; dt=0.090862 Current time 2026-02-10 37699.860300; dt=0.090834 Current time 2026-02-10 37700.768517; dt=0.090812 Current time 2026-02-10 37701.676552; dt=0.090797 Current time 2026-02-10 37702.584473; dt=0.090789 Current time 2026-02-10 37703.492342; dt=0.090787 Current time 2026-02-10 37704.400233; dt=0.090792 Current time 2026-02-10 37705.308220; dt=0.090805 Current time 2026-02-10 37706.216385; dt=0.090827 Current time 2026-02-10 37707.124811; dt=0.090857 Current time 2026-02-10 37708.033586; dt=0.090896 Current time 2026-02-10 37708.942799; dt=0.090944 Current time 2026-02-10 37709.852545; dt=0.091001 Current time 2026-02-10 37710.762913; dt=0.091067 Current time 2026-02-10 37711.673995; dt=0.091143 Current time 2026-02-10 37712.585880; dt=0.091227 Current time 2026-02-10 37713.498341; dt=0.091246 Current time 2026-02-10 37714.410823; dt=0.091251 Current time 2026-02-10 37715.323406; dt=0.091265 Current time 2026-02-10 37716.236176; dt=0.091288 Current time 2026-02-10 37717.149215; dt=0.091318 Current time 2026-02-10 37718.062597; dt=0.091356 Current time 2026-02-10 37718.976392; dt=0.091400 Current time 2026-02-10 37719.890661; dt=0.091450 Current time 2026-02-10 37720.805463; dt=0.091506 Current time 2026-02-10 37721.720851; dt=0.091566 Current time 2026-02-10 37722.636873; dt=0.091632 Current time 2026-02-10 37723.553575; dt=0.091702 Current time 2026-02-10 37724.470999; dt=0.091776 Current time 2026-02-10 37725.389180; dt=0.091853 Current time 2026-02-10 37726.308154; dt=0.091934 Current time 2026-02-10 37727.227952; dt=0.092018 Current time 2026-02-10 37728.148603; dt=0.092104 Current time 2026-02-10 37729.070132; dt=0.092193 Current time 2026-02-10 37729.992565; dt=0.092285 Current time 2026-02-10 37730.915924; dt=0.092378 Current time 2026-02-10 37731.840229; dt=0.092474 Current time 2026-02-10 37732.765502; dt=0.092571 Current time 2026-02-10 37733.691761; dt=0.092671 Current time 2026-02-10 37734.619023; dt=0.092772 Current time 2026-02-10 37735.547098; dt=0.092807 Current time 2026-02-10 37736.475002; dt=0.092778 Current time 2026-02-10 37737.402633; dt=0.092752 Current time 2026-02-10 37738.330020; dt=0.092728 Current time 2026-02-10 37739.257188; dt=0.092708 System sizes according to Phiall: 173 64 158 -->Number of user-defined output variables: 9 HDF5 Output file name: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/20260210_37740.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... Throttling dt to: 2.439E-03 Current time 2026-02-10 37740.002439; dt=0.002439 Throttling dt to: 4.878E-03 Throttling dt to: 9.756E-03 Throttling dt to: 19.511E-03 Throttling dt to: 39.023E-03 Throttling dt to: 78.045E-03 Current time 2026-02-10 37740.617096; dt=0.092684 Current time 2026-02-10 37741.543897; dt=0.092679 Current time 2026-02-10 37742.470723; dt=0.092688 Current time 2026-02-10 37743.397703; dt=0.092708 Current time 2026-02-10 37744.324649; dt=0.092483 Current time 2026-02-10 37745.238424; dt=0.090499 Current time 2026-02-10 37746.132853; dt=0.088352 Current time 2026-02-10 37746.999916; dt=0.085465 Current time 2026-02-10 37747.841778; dt=0.083231 Current time 2026-02-10 37748.664401; dt=0.081543 Current time 2026-02-10 37749.472589; dt=0.080283 Current time 2026-02-10 37750.270086; dt=0.079356 Current time 2026-02-10 37751.059791; dt=0.078688 Current time 2026-02-10 37751.842980; dt=0.078050 Current time 2026-02-10 37752.621066; dt=0.077642 Current time 2026-02-10 37753.396202; dt=0.077435 Current time 2026-02-10 37754.170046; dt=0.077355 Current time 2026-02-10 37754.943452; dt=0.077334 Current time 2026-02-10 37755.716789; dt=0.077336 Current time 2026-02-10 37756.490206; dt=0.077347 Current time 2026-02-10 37757.263746; dt=0.077361 Current time 2026-02-10 37758.037459; dt=0.077381 Current time 2026-02-10 37758.811395; dt=0.077405 Current time 2026-02-10 37759.585592; dt=0.077432 Current time 2026-02-10 37760.360072; dt=0.077462 Current time 2026-02-10 37761.134867; dt=0.077494 Current time 2026-02-10 37761.909996; dt=0.077528 Current time 2026-02-10 37762.685466; dt=0.077563 Current time 2026-02-10 37763.461308; dt=0.077602 Current time 2026-02-10 37764.237569; dt=0.077646 Current time 2026-02-10 37765.014291; dt=0.077694 Current time 2026-02-10 37765.791501; dt=0.077744 Current time 2026-02-10 37766.569243; dt=0.077799 Current time 2026-02-10 37767.347541; dt=0.077846 Current time 2026-02-10 37768.126013; dt=0.077849 Current time 2026-02-10 37768.904547; dt=0.077857 Current time 2026-02-10 37769.683187; dt=0.077870 Current time 2026-02-10 37770.461972; dt=0.077886 Current time 2026-02-10 37771.240937; dt=0.077906 Current time 2026-02-10 37772.020114; dt=0.077928 Current time 2026-02-10 37772.799532; dt=0.077953 Current time 2026-02-10 37773.579217; dt=0.077981 Current time 2026-02-10 37774.359194; dt=0.078011 Current time 2026-02-10 37775.139485; dt=0.078044 Current time 2026-02-10 37775.920111; dt=0.078078 Current time 2026-02-10 37776.701092; dt=0.078115 Current time 2026-02-10 37777.482447; dt=0.078153 Current time 2026-02-10 37778.264193; dt=0.078193 Current time 2026-02-10 37779.046350; dt=0.078235 Current time 2026-02-10 37779.828937; dt=0.078278 Current time 2026-02-10 37780.611971; dt=0.078324 Current time 2026-02-10 37781.395473; dt=0.078372 Current time 2026-02-10 37782.179460; dt=0.078421 Current time 2026-02-10 37782.963945; dt=0.078471 Current time 2026-02-10 37783.748948; dt=0.078524 Current time 2026-02-10 37784.534486; dt=0.078578 Current time 2026-02-10 37785.320578; dt=0.078635 Current time 2026-02-10 37786.107241; dt=0.078692 Current time 2026-02-10 37786.894491; dt=0.078752 Current time 2026-02-10 37787.682345; dt=0.078813 Current time 2026-02-10 37788.470816; dt=0.078875 Current time 2026-02-10 37789.259922; dt=0.078939 Current time 2026-02-10 37790.049600; dt=0.078980 Current time 2026-02-10 37790.839493; dt=0.078997 Current time 2026-02-10 37791.629573; dt=0.079017 Current time 2026-02-10 37792.419863; dt=0.079039 Current time 2026-02-10 37793.210382; dt=0.079063 Current time 2026-02-10 37794.001152; dt=0.079089 Current time 2026-02-10 37794.792187; dt=0.079116 Current time 2026-02-10 37795.583504; dt=0.079145 Current time 2026-02-10 37796.375118; dt=0.079175 Current time 2026-02-10 37797.167043; dt=0.079207 Current time 2026-02-10 37797.959294; dt=0.079240 Current time 2026-02-10 37798.751883; dt=0.079275 Current time 2026-02-10 37799.544822; dt=0.079310 System sizes according to Phiall: 173 64 158 -->Number of user-defined output variables: 9 HDF5 Output file name: //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/20260210_37800.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... ------------------------------- UTsec = 36960 s -------------------------------- Full or milestone input detected. Loading conductances output file... FAILED Loading conductances from //dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/gneiss_debug/conductances/20260210_36960.000000_sig.mat