/dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 3 / 15 at 20240209T091117.643 16 MPI processes detected /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 6 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 7 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 10 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 14 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 15 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 2 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 5 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 13 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 1 / 15 at 20240209T091117.644 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 4 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 0 / 15 at 20240209T091117.644 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 9 / 15 at 20240209T091117.643 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 12 / 15 at 20240209T091117.644 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 8 / 15 at 20240209T091117.644 /dartfs-hpc/rc/lab/L/LynchK/gemini_disco/gemini3d/build/gemini.bin Process: 11 / 15 at 20240209T091117.650 ******************** input config **************** simulation directory: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78 start year-month-day: 2017-03-02 start time: 28360.000 duration: 90.000 output every: 5.000 gemini.f90: using input data files: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/simsize.h5 /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/simgrid.h5 /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/initial_conditions.h5 no neutral disturbance specified. Precipitation file input cadence (s): 5.000 Precipitation file input source directory: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Electric field file input cadence (s): 5.0000000000000000 Electric field file input source directory: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields GLOW disabled MSISE00 enabled for neutral atmosphere calculations. EIA disabled Variable background neutral atmosphere disabled. Background precipitation has total energy flux and energy: 10.000000000000000 1000.0000000000000 Parallel current calculation enabled. Inertial capacitance calculation type: 0 Diffusion solve type: 2 Milestone output disabled. Gravitaional drift terms disabled. Lagrangian grid disabled **************** end input config *************** grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:3 at process grid location: 3 0 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:12 at process grid location: 0 3 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:14 at process grid location: 2 3 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:15 at process grid location: 3 3 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:7 at process grid location: 3 1 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:5 at process grid location: 1 1 Process:0 at process grid location: 0 0 get_subgrid_size: 3D run get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:8 at process grid location: 0 2 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:10 at process grid location: 2 2 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:9 at process grid location: 1 2 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:4 at process grid location: 0 1 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:1 at process grid location: 1 0 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:2 at process grid location: 2 0 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:11 at process grid location: 3 2 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:13 at process grid location: 1 3 get_subgrid_size: 3D run grid_size_root: full grid size: 212 128 512 process grid (Number MPI processes) x2, x3: 4 4 Process:6 at process grid location: 2 1 get_subgrid_size: 3D run Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: metric factors for cell centers... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: geographic coordinates from magnetic... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell p-intefaces... Detected Cartesian grid... cart:calc_coord_diffs done cart:init_storage done make_cartmesh: allocating space for grid of size: 216 36 132 make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell centers... make_cartmesh: geographic coordinates from magnetic... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: metric factors for cell centers... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: cartesian unit vectors... make_cartmesh: metric factors for cell centers... make_cartmesh: base type-bound procedure calls... make_cartmesh: cartesian unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: magnetic fields... make_cartmesh: magnetic fields... make_cartmesh: cartesian unit vectors... make_cartmesh: gravity... 216 36 132 make_cartmesh: cartesian unit vectors... make_cartmesh: metric factors for cell q-interfaces... make_cartmesh: gravity... 216 36 132 make_cartmesh: cartesian unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: metric factors for cell p-intefaces... make_cartmesh: magnetic fields... make_cartmesh: base type-bound procedure calls... make_cartmesh: gravity... 216 36 132 make_cartmesh: cartesian unit vectors... make_cartmesh: metric factors for cell phi-interfaces... make_cartmesh: cartesian unit vectors... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: base type-bound procedure calls... make_cartmesh: magnetic fields... make_cartmesh: spherical ECEF unit vectors... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: gravity... 216 36 132 make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: magnetic fields... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: base type-bound procedure calls... make_cartmesh: gravity... 216 36 132 make_cartmesh: base type-bound procedure calls... make_cartmesh: base type-bound procedure calls... make_cartmesh: magnetic fields... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: base type-bound procedure calls... make_cartmesh: gravity... 216 36 132 make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: inclination angle... make_cartmesh done init_storage_root done make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: cartesian unit vectors... make_cartmesh: cartesian unit vectors... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: base type-bound procedure calls... make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: base type-bound procedure calls... make_cartmesh: cartesian unit vectors... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: cartesian unit vectors... make_cartmesh: base type-bound procedure calls... make_cartmesh: inclination angle... make_cartmesh done make_cartmesh: magnetic fields... make_cartmesh: gravity... 216 36 132 make_cartmesh: base type-bound procedure calls... make_cartmesh: inclination angle... make_cartmesh done enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... gather_grid_root done calc_coord_diffs_root done enforce_gridmpi_periodic done grid_check done Done with read_grid_in... Starting from beginning of simulation... /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/simsize.h5 input dimensions: 212 128 512 Target (output) grid structure dimensions: 212 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Precipitation size: llon,llat: 128 512 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Sent ICs to workers in 1.859E+00 seconds. Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation size: llon,llat: 128 512 Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Initial conditions (root): ------------------------ Min/max input density: 3.57E+08 1.81E+10 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Min/max input velocity: -3.10E+02 2.28E+01 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Min/max input temperature: 1.79E+02 1.41E+03 Min/max input electric potential: 0.00E+00 0.00E+00 Min/max input electric potential (full grid): 0.00E+00 0.00E+00 Priming electric field input Precipitation input: -------------------- READ precipitation size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/particles Precipitation size: llon,llat: 128 512 Precipitation mlon,mlat extent: 256.600 261.788 66.091 67.199 Priming dataset: electron precipitation prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Electric field input: -------------------- READ electric field size from: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields Electric field size: llon,llat: -1 -1 !!!!! efielddata detected a direct fill of input arrays (no interpolation) !!!!! Electric field mlon,mlat extent: 256.600 261.788 66.091 67.199 Preparing to prime input data arrays... Priming dataset: electric field boundary conditions date and time: 2017 3 2 28360.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28360.000000 date and time: 2017 3 2 28365.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28365.000000 prime times: 0.0000000000000000 5.0000000000000000 prime reference date: 2017 3 2 28360.000000000000 2017 3 2 28365.000000000000 Recomputed initial dist. fields via pot2perpfield: gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 gemini 0.0000000000000000 0.0000000000000000 Recomputed initial fields including background (BGfieldLagrangian): 0.0000000000000000 0.0000000000000000 -2.3420413956046104E-002 -2.3420413956046104E-002 -5.4306169040501118E-003 -5.4306169040501118E-003 Priming precipitation input Computing background and priming neutral perturbation input (if used) Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4565020000000004 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4549760000000020 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4568839999999987 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4513390000000008 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4510019999999990 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4849789999999992 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4531449999999992 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4661749999999998 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4640850000000007 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4577149999999968 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4710179999999973 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4669990000000013 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.4877749999999992 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.5039669999999994 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.5316569999999992 Initial neutral density and temperature (from MSIS) at time: 2017 3 2 28360.000000000000 calculated in time: 5.5254089999999998 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.37870200000000054 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.36173499999999947 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.35890900000000059 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.39840799999999987 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.36028900000000164 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.36818099999999987 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.37025000000000219 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.36937700000000007 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.36704899999999796 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.42865100000000211 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.43918799999999791 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.44736699999999985 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.43771599999999822 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.44882600000000039 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.35587499999999750 Initial neutral winds (from HWM) at time: 2017 3 2 28360.000000000000 calculated in time: 0.39711099999999888 Recomputed initial drifts: -186.11033334377248 176.91316409250132 -474.62196646962667 0.0000000000000000 Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Filling ghost cells with global reference variables. Current time 2017-03-02 28360.000001; dt=0.000001 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28360.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... Throttling dt to: 2.000E-06 Current time 2017-03-02 28360.000003; dt=0.000002 Throttling dt to: 4.000E-06 Current time 2017-03-02 28360.000007; dt=0.000004 Throttling dt to: 8.000E-06 Current time 2017-03-02 28360.000015; dt=0.000008 Throttling dt to: 16.000E-06 Current time 2017-03-02 28360.000031; dt=0.000016 Throttling dt to: 32.000E-06 Current time 2017-03-02 28360.000063; dt=0.000032 Throttling dt to: 64.000E-06 Current time 2017-03-02 28360.000127; dt=0.000064 Throttling dt to: 128.000E-06 Current time 2017-03-02 28360.000255; dt=0.000128 Throttling dt to: 256.000E-06 Current time 2017-03-02 28360.000511; dt=0.000256 Throttling dt to: 512.000E-06 Current time 2017-03-02 28360.001023; dt=0.000512 Throttling dt to: 1.024E-03 Current time 2017-03-02 28360.002047; dt=0.001024 Throttling dt to: 2.048E-03 Current time 2017-03-02 28360.004095; dt=0.002048 Throttling dt to: 4.096E-03 Current time 2017-03-02 28360.008191; dt=0.004096 Throttling dt to: 8.192E-03 Current time 2017-03-02 28360.016383; dt=0.008192 Throttling dt to: 16.384E-03 Current time 2017-03-02 28360.032767; dt=0.016384 Throttling dt to: 32.768E-03 Current time 2017-03-02 28360.065535; dt=0.032768 Throttling dt to: 65.536E-03 Current time 2017-03-02 28360.131071; dt=0.065536 Current time 2017-03-02 28360.237448; dt=0.106377 Current time 2017-03-02 28360.329595; dt=0.092148 Current time 2017-03-02 28360.411962; dt=0.082366 Current time 2017-03-02 28360.487929; dt=0.075967 Current time 2017-03-02 28360.559354; dt=0.071425 Current time 2017-03-02 28360.627346; dt=0.067992 Current time 2017-03-02 28360.692637; dt=0.065290 Current time 2017-03-02 28360.755720; dt=0.063084 Current time 2017-03-02 28360.816959; dt=0.061239 Current time 2017-03-02 28360.876627; dt=0.059668 Current time 2017-03-02 28360.934933; dt=0.058306 Current time 2017-03-02 28360.992041; dt=0.057108 Current time 2017-03-02 28361.048080; dt=0.056039 Current time 2017-03-02 28361.103157; dt=0.055076 Current time 2017-03-02 28361.157359; dt=0.054202 Current time 2017-03-02 28361.210760; dt=0.053401 Current time 2017-03-02 28361.263422; dt=0.052662 Current time 2017-03-02 28361.315384; dt=0.051962 Current time 2017-03-02 28361.366657; dt=0.051274 Current time 2017-03-02 28361.417291; dt=0.050634 Current time 2017-03-02 28361.467334; dt=0.050044 Current time 2017-03-02 28361.516836; dt=0.049501 Current time 2017-03-02 28361.565829; dt=0.048993 Current time 2017-03-02 28361.614350; dt=0.048521 Current time 2017-03-02 28361.662436; dt=0.048086 Current time 2017-03-02 28361.710112; dt=0.047676 Current time 2017-03-02 28361.757405; dt=0.047293 Current time 2017-03-02 28361.804327; dt=0.046922 Current time 2017-03-02 28361.850864; dt=0.046536 Current time 2017-03-02 28361.897023; dt=0.046159 Current time 2017-03-02 28361.942817; dt=0.045794 Current time 2017-03-02 28361.988267; dt=0.045450 Current time 2017-03-02 28362.033373; dt=0.045106 Current time 2017-03-02 28362.078154; dt=0.044782 Current time 2017-03-02 28362.122623; dt=0.044469 Current time 2017-03-02 28362.166787; dt=0.044164 Current time 2017-03-02 28362.210670; dt=0.043883 Current time 2017-03-02 28362.254279; dt=0.043609 Current time 2017-03-02 28362.297640; dt=0.043361 Current time 2017-03-02 28362.340764; dt=0.043123 Current time 2017-03-02 28362.383678; dt=0.042914 Current time 2017-03-02 28362.426390; dt=0.042713 Current time 2017-03-02 28362.468932; dt=0.042542 Current time 2017-03-02 28362.511305; dt=0.042373 Current time 2017-03-02 28362.553537; dt=0.042232 Current time 2017-03-02 28362.595634; dt=0.042096 Current time 2017-03-02 28362.637609; dt=0.041976 Current time 2017-03-02 28362.679428; dt=0.041819 Current time 2017-03-02 28362.721079; dt=0.041651 Current time 2017-03-02 28362.762563; dt=0.041484 Current time 2017-03-02 28362.803903; dt=0.041340 Current time 2017-03-02 28362.845106; dt=0.041203 Current time 2017-03-02 28362.886187; dt=0.041081 Current time 2017-03-02 28362.927161; dt=0.040974 Current time 2017-03-02 28362.968032; dt=0.040871 Current time 2017-03-02 28363.008817; dt=0.040785 Current time 2017-03-02 28363.049523; dt=0.040707 Current time 2017-03-02 28363.090158; dt=0.040635 Current time 2017-03-02 28363.130735; dt=0.040576 Current time 2017-03-02 28363.171264; dt=0.040529 Current time 2017-03-02 28363.211745; dt=0.040481 Current time 2017-03-02 28363.252188; dt=0.040443 Current time 2017-03-02 28363.292603; dt=0.040415 Current time 2017-03-02 28363.332997; dt=0.040394 Current time 2017-03-02 28363.373375; dt=0.040378 Current time 2017-03-02 28363.413740; dt=0.040364 Current time 2017-03-02 28363.454097; dt=0.040357 Current time 2017-03-02 28363.494452; dt=0.040356 Current time 2017-03-02 28363.534811; dt=0.040359 Current time 2017-03-02 28363.575179; dt=0.040368 Current time 2017-03-02 28363.615560; dt=0.040381 Current time 2017-03-02 28363.655958; dt=0.040398 Current time 2017-03-02 28363.696377; dt=0.040419 Current time 2017-03-02 28363.736820; dt=0.040443 Current time 2017-03-02 28363.777290; dt=0.040470 Current time 2017-03-02 28363.817790; dt=0.040500 Current time 2017-03-02 28363.858323; dt=0.040533 Current time 2017-03-02 28363.898892; dt=0.040569 Current time 2017-03-02 28363.939502; dt=0.040609 Current time 2017-03-02 28363.980154; dt=0.040653 Current time 2017-03-02 28364.020853; dt=0.040699 Current time 2017-03-02 28364.061603; dt=0.040749 Current time 2017-03-02 28364.102406; dt=0.040803 Current time 2017-03-02 28364.143267; dt=0.040861 Current time 2017-03-02 28364.184189; dt=0.040922 Current time 2017-03-02 28364.225177; dt=0.040988 Current time 2017-03-02 28364.266235; dt=0.041058 Current time 2017-03-02 28364.307369; dt=0.041133 Current time 2017-03-02 28364.348582; dt=0.041213 Current time 2017-03-02 28364.389881; dt=0.041299 Current time 2017-03-02 28364.431272; dt=0.041391 Current time 2017-03-02 28364.472762; dt=0.041490 Current time 2017-03-02 28364.514357; dt=0.041596 Current time 2017-03-02 28364.556067; dt=0.041710 Current time 2017-03-02 28364.597900; dt=0.041833 Current time 2017-03-02 28364.639862; dt=0.041962 Current time 2017-03-02 28364.681963; dt=0.042101 Current time 2017-03-02 28364.724170; dt=0.042206 Current time 2017-03-02 28364.766428; dt=0.042259 Current time 2017-03-02 28364.808741; dt=0.042312 Current time 2017-03-02 28364.851107; dt=0.042366 Current time 2017-03-02 28364.893496; dt=0.042388 Current time 2017-03-02 28364.935872; dt=0.042376 Current time 2017-03-02 28364.978236; dt=0.042365 Current time 2017-03-02 28365.000000; dt=0.021764 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28365.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28370.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28370.000000 Current time 2017-03-02 28365.042467; dt=0.042467 Current time 2017-03-02 28365.084805; dt=0.042338 Current time 2017-03-02 28365.127152; dt=0.042347 Current time 2017-03-02 28365.169503; dt=0.042350 Current time 2017-03-02 28365.211858; dt=0.042355 Current time 2017-03-02 28365.254219; dt=0.042361 Current time 2017-03-02 28365.296586; dt=0.042367 Current time 2017-03-02 28365.338960; dt=0.042374 Current time 2017-03-02 28365.381342; dt=0.042382 Current time 2017-03-02 28365.423734; dt=0.042391 Current time 2017-03-02 28365.466134; dt=0.042401 Current time 2017-03-02 28365.508545; dt=0.042411 Current time 2017-03-02 28365.550967; dt=0.042422 Current time 2017-03-02 28365.593401; dt=0.042434 Current time 2017-03-02 28365.635847; dt=0.042446 Current time 2017-03-02 28365.678306; dt=0.042459 Current time 2017-03-02 28365.720779; dt=0.042473 Current time 2017-03-02 28365.763267; dt=0.042488 Current time 2017-03-02 28365.805770; dt=0.042503 Current time 2017-03-02 28365.848289; dt=0.042519 Current time 2017-03-02 28365.890824; dt=0.042535 Current time 2017-03-02 28365.933377; dt=0.042553 Current time 2017-03-02 28365.975947; dt=0.042570 Current time 2017-03-02 28366.018536; dt=0.042589 Current time 2017-03-02 28366.061144; dt=0.042608 Current time 2017-03-02 28366.103772; dt=0.042628 Current time 2017-03-02 28366.146420; dt=0.042648 Current time 2017-03-02 28366.189089; dt=0.042669 Current time 2017-03-02 28366.231780; dt=0.042691 Current time 2017-03-02 28366.274493; dt=0.042713 Current time 2017-03-02 28366.317229; dt=0.042736 Current time 2017-03-02 28366.359988; dt=0.042759 Current time 2017-03-02 28366.402771; dt=0.042783 Current time 2017-03-02 28366.445577; dt=0.042806 Current time 2017-03-02 28366.488407; dt=0.042830 Current time 2017-03-02 28366.531261; dt=0.042854 Current time 2017-03-02 28366.574141; dt=0.042879 Current time 2017-03-02 28366.617045; dt=0.042905 Current time 2017-03-02 28366.659976; dt=0.042930 Current time 2017-03-02 28366.702932; dt=0.042956 Current time 2017-03-02 28366.745915; dt=0.042983 Current time 2017-03-02 28366.788924; dt=0.043009 Current time 2017-03-02 28366.831960; dt=0.043036 Current time 2017-03-02 28366.875024; dt=0.043064 Current time 2017-03-02 28366.918115; dt=0.043091 Current time 2017-03-02 28366.961234; dt=0.043119 Current time 2017-03-02 28367.004380; dt=0.043146 Current time 2017-03-02 28367.047553; dt=0.043173 Current time 2017-03-02 28367.090753; dt=0.043200 Current time 2017-03-02 28367.133980; dt=0.043228 Current time 2017-03-02 28367.177236; dt=0.043255 Current time 2017-03-02 28367.220519; dt=0.043283 Current time 2017-03-02 28367.263830; dt=0.043311 Current time 2017-03-02 28367.307169; dt=0.043339 Current time 2017-03-02 28367.350537; dt=0.043368 Current time 2017-03-02 28367.393933; dt=0.043396 Current time 2017-03-02 28367.437358; dt=0.043425 Current time 2017-03-02 28367.480812; dt=0.043454 Current time 2017-03-02 28367.524295; dt=0.043483 Current time 2017-03-02 28367.567807; dt=0.043512 Current time 2017-03-02 28367.611348; dt=0.043541 Current time 2017-03-02 28367.654918; dt=0.043570 Current time 2017-03-02 28367.698517; dt=0.043600 Current time 2017-03-02 28367.742147; dt=0.043629 Current time 2017-03-02 28367.785806; dt=0.043659 Current time 2017-03-02 28367.829494; dt=0.043689 Current time 2017-03-02 28367.873212; dt=0.043718 Current time 2017-03-02 28367.916961; dt=0.043748 Current time 2017-03-02 28367.960739; dt=0.043778 Current time 2017-03-02 28368.004547; dt=0.043808 Current time 2017-03-02 28368.048386; dt=0.043839 Current time 2017-03-02 28368.092255; dt=0.043869 Current time 2017-03-02 28368.136154; dt=0.043899 Current time 2017-03-02 28368.180083; dt=0.043929 Current time 2017-03-02 28368.224042; dt=0.043958 Current time 2017-03-02 28368.268029; dt=0.043987 Current time 2017-03-02 28368.312045; dt=0.044016 Current time 2017-03-02 28368.356090; dt=0.044045 Current time 2017-03-02 28368.400165; dt=0.044074 Current time 2017-03-02 28368.444268; dt=0.044103 Current time 2017-03-02 28368.488401; dt=0.044133 Current time 2017-03-02 28368.532562; dt=0.044162 Current time 2017-03-02 28368.576753; dt=0.044191 Current time 2017-03-02 28368.620974; dt=0.044220 Current time 2017-03-02 28368.665223; dt=0.044250 Current time 2017-03-02 28368.709502; dt=0.044279 Current time 2017-03-02 28368.753810; dt=0.044308 Current time 2017-03-02 28368.798148; dt=0.044337 Current time 2017-03-02 28368.842514; dt=0.044367 Current time 2017-03-02 28368.886910; dt=0.044396 Current time 2017-03-02 28368.931336; dt=0.044425 Current time 2017-03-02 28368.975791; dt=0.044455 Current time 2017-03-02 28369.020275; dt=0.044484 Current time 2017-03-02 28369.064788; dt=0.044513 Current time 2017-03-02 28369.109331; dt=0.044543 Current time 2017-03-02 28369.153903; dt=0.044572 Current time 2017-03-02 28369.198504; dt=0.044601 Current time 2017-03-02 28369.243135; dt=0.044631 Current time 2017-03-02 28369.287795; dt=0.044660 Current time 2017-03-02 28369.332484; dt=0.044689 Current time 2017-03-02 28369.377203; dt=0.044718 Current time 2017-03-02 28369.421949; dt=0.044747 Current time 2017-03-02 28369.466724; dt=0.044775 Current time 2017-03-02 28369.511527; dt=0.044802 Current time 2017-03-02 28369.556357; dt=0.044830 Current time 2017-03-02 28369.601215; dt=0.044858 Current time 2017-03-02 28369.646100; dt=0.044886 Current time 2017-03-02 28369.691014; dt=0.044913 Current time 2017-03-02 28369.735954; dt=0.044941 Current time 2017-03-02 28369.780923; dt=0.044968 Current time 2017-03-02 28369.825919; dt=0.044996 Current time 2017-03-02 28369.870943; dt=0.045024 Current time 2017-03-02 28369.915994; dt=0.045051 Current time 2017-03-02 28369.961072; dt=0.045078 Current time 2017-03-02 28370.000000; dt=0.038928 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28370.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28375.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28375.000000 Current time 2017-03-02 28370.045165; dt=0.045165 Current time 2017-03-02 28370.090320; dt=0.045155 Current time 2017-03-02 28370.135504; dt=0.045184 Current time 2017-03-02 28370.180715; dt=0.045211 Current time 2017-03-02 28370.225954; dt=0.045238 Current time 2017-03-02 28370.271219; dt=0.045265 Current time 2017-03-02 28370.316511; dt=0.045292 Current time 2017-03-02 28370.361831; dt=0.045319 Current time 2017-03-02 28370.407177; dt=0.045346 Current time 2017-03-02 28370.452550; dt=0.045373 Current time 2017-03-02 28370.497950; dt=0.045400 Current time 2017-03-02 28370.543376; dt=0.045427 Current time 2017-03-02 28370.588829; dt=0.045453 Current time 2017-03-02 28370.634309; dt=0.045480 Current time 2017-03-02 28370.679816; dt=0.045506 Current time 2017-03-02 28370.725348; dt=0.045533 Current time 2017-03-02 28370.770907; dt=0.045559 Current time 2017-03-02 28370.816491; dt=0.045584 Current time 2017-03-02 28370.862099; dt=0.045608 Current time 2017-03-02 28370.907732; dt=0.045633 Current time 2017-03-02 28370.953390; dt=0.045658 Current time 2017-03-02 28370.999073; dt=0.045683 Current time 2017-03-02 28371.044780; dt=0.045707 Current time 2017-03-02 28371.090512; dt=0.045732 Current time 2017-03-02 28371.136269; dt=0.045756 Current time 2017-03-02 28371.182049; dt=0.045781 Current time 2017-03-02 28371.227854; dt=0.045805 Current time 2017-03-02 28371.273684; dt=0.045829 Current time 2017-03-02 28371.319537; dt=0.045853 Current time 2017-03-02 28371.365415; dt=0.045877 Current time 2017-03-02 28371.411316; dt=0.045901 Current time 2017-03-02 28371.457241; dt=0.045925 Current time 2017-03-02 28371.503191; dt=0.045949 Current time 2017-03-02 28371.549164; dt=0.045973 Current time 2017-03-02 28371.595160; dt=0.045997 Current time 2017-03-02 28371.641180; dt=0.046020 Current time 2017-03-02 28371.687224; dt=0.046044 Current time 2017-03-02 28371.733291; dt=0.046067 Current time 2017-03-02 28371.779381; dt=0.046090 Current time 2017-03-02 28371.825494; dt=0.046113 Current time 2017-03-02 28371.871630; dt=0.046136 Current time 2017-03-02 28371.917790; dt=0.046159 Current time 2017-03-02 28371.963972; dt=0.046182 Current time 2017-03-02 28372.010177; dt=0.046205 Current time 2017-03-02 28372.056404; dt=0.046227 Current time 2017-03-02 28372.102654; dt=0.046250 Current time 2017-03-02 28372.148926; dt=0.046272 Current time 2017-03-02 28372.195220; dt=0.046294 Current time 2017-03-02 28372.241537; dt=0.046317 Current time 2017-03-02 28372.287876; dt=0.046339 Current time 2017-03-02 28372.334236; dt=0.046361 Current time 2017-03-02 28372.380619; dt=0.046382 Current time 2017-03-02 28372.427023; dt=0.046404 Current time 2017-03-02 28372.473449; dt=0.046426 Current time 2017-03-02 28372.519895; dt=0.046447 Current time 2017-03-02 28372.566363; dt=0.046467 Current time 2017-03-02 28372.612851; dt=0.046488 Current time 2017-03-02 28372.659360; dt=0.046509 Current time 2017-03-02 28372.705889; dt=0.046529 Current time 2017-03-02 28372.752438; dt=0.046549 Current time 2017-03-02 28372.799007; dt=0.046570 Current time 2017-03-02 28372.845597; dt=0.046590 Current time 2017-03-02 28372.892207; dt=0.046610 Current time 2017-03-02 28372.938836; dt=0.046630 Current time 2017-03-02 28372.985486; dt=0.046649 Current time 2017-03-02 28373.032155; dt=0.046669 Current time 2017-03-02 28373.078843; dt=0.046689 Current time 2017-03-02 28373.125552; dt=0.046708 Current time 2017-03-02 28373.172279; dt=0.046728 Current time 2017-03-02 28373.219026; dt=0.046747 Current time 2017-03-02 28373.265792; dt=0.046766 Current time 2017-03-02 28373.312577; dt=0.046785 Current time 2017-03-02 28373.359381; dt=0.046804 Current time 2017-03-02 28373.406204; dt=0.046823 Current time 2017-03-02 28373.453045; dt=0.046842 Current time 2017-03-02 28373.499906; dt=0.046860 Current time 2017-03-02 28373.546784; dt=0.046879 Current time 2017-03-02 28373.593681; dt=0.046897 Current time 2017-03-02 28373.640597; dt=0.046915 Current time 2017-03-02 28373.687531; dt=0.046934 Current time 2017-03-02 28373.734482; dt=0.046952 Current time 2017-03-02 28373.781452; dt=0.046969 Current time 2017-03-02 28373.828439; dt=0.046987 Current time 2017-03-02 28373.875443; dt=0.047005 Current time 2017-03-02 28373.922466; dt=0.047022 Current time 2017-03-02 28373.969505; dt=0.047040 Current time 2017-03-02 28374.016562; dt=0.047057 Current time 2017-03-02 28374.063637; dt=0.047074 Current time 2017-03-02 28374.110728; dt=0.047091 Current time 2017-03-02 28374.157836; dt=0.047108 Current time 2017-03-02 28374.204961; dt=0.047125 Current time 2017-03-02 28374.252103; dt=0.047142 Current time 2017-03-02 28374.299261; dt=0.047158 Current time 2017-03-02 28374.346436; dt=0.047175 Current time 2017-03-02 28374.393628; dt=0.047191 Current time 2017-03-02 28374.440835; dt=0.047208 Current time 2017-03-02 28374.488059; dt=0.047224 Current time 2017-03-02 28374.535299; dt=0.047240 Current time 2017-03-02 28374.582555; dt=0.047256 Current time 2017-03-02 28374.629826; dt=0.047272 Current time 2017-03-02 28374.677114; dt=0.047287 Current time 2017-03-02 28374.724417; dt=0.047303 Current time 2017-03-02 28374.771735; dt=0.047319 Current time 2017-03-02 28374.819069; dt=0.047334 Current time 2017-03-02 28374.866418; dt=0.047349 Current time 2017-03-02 28374.913783; dt=0.047364 Current time 2017-03-02 28374.961162; dt=0.047379 Current time 2017-03-02 28375.000000; dt=0.038838 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28375.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28380.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28380.000000 Current time 2017-03-02 28375.047460; dt=0.047460 Current time 2017-03-02 28375.094879; dt=0.047419 Current time 2017-03-02 28375.142315; dt=0.047436 Current time 2017-03-02 28375.189765; dt=0.047450 Current time 2017-03-02 28375.237230; dt=0.047465 Current time 2017-03-02 28375.284709; dt=0.047479 Current time 2017-03-02 28375.332203; dt=0.047493 Current time 2017-03-02 28375.379710; dt=0.047507 Current time 2017-03-02 28375.427231; dt=0.047521 Current time 2017-03-02 28375.474765; dt=0.047534 Current time 2017-03-02 28375.522313; dt=0.047548 Current time 2017-03-02 28375.569874; dt=0.047561 Current time 2017-03-02 28375.617448; dt=0.047574 Current time 2017-03-02 28375.665035; dt=0.047587 Current time 2017-03-02 28375.712635; dt=0.047600 Current time 2017-03-02 28375.760248; dt=0.047613 Current time 2017-03-02 28375.807874; dt=0.047626 Current time 2017-03-02 28375.855512; dt=0.047638 Current time 2017-03-02 28375.903162; dt=0.047651 Current time 2017-03-02 28375.950826; dt=0.047663 Current time 2017-03-02 28375.998501; dt=0.047675 Current time 2017-03-02 28376.046189; dt=0.047688 Current time 2017-03-02 28376.093889; dt=0.047700 Current time 2017-03-02 28376.141600; dt=0.047712 Current time 2017-03-02 28376.189324; dt=0.047724 Current time 2017-03-02 28376.237059; dt=0.047735 Current time 2017-03-02 28376.284806; dt=0.047747 Current time 2017-03-02 28376.332565; dt=0.047758 Current time 2017-03-02 28376.380335; dt=0.047770 Current time 2017-03-02 28376.428116; dt=0.047781 Current time 2017-03-02 28376.475908; dt=0.047792 Current time 2017-03-02 28376.523712; dt=0.047804 Current time 2017-03-02 28376.571526; dt=0.047815 Current time 2017-03-02 28376.619352; dt=0.047825 Current time 2017-03-02 28376.667188; dt=0.047836 Current time 2017-03-02 28376.715035; dt=0.047847 Current time 2017-03-02 28376.762893; dt=0.047858 Current time 2017-03-02 28376.810761; dt=0.047868 Current time 2017-03-02 28376.858639; dt=0.047879 Current time 2017-03-02 28376.906528; dt=0.047889 Current time 2017-03-02 28376.954427; dt=0.047899 Current time 2017-03-02 28377.002336; dt=0.047909 Current time 2017-03-02 28377.050255; dt=0.047919 Current time 2017-03-02 28377.098184; dt=0.047929 Current time 2017-03-02 28377.146123; dt=0.047939 Current time 2017-03-02 28377.194072; dt=0.047949 Current time 2017-03-02 28377.242030; dt=0.047958 Current time 2017-03-02 28377.289998; dt=0.047968 Current time 2017-03-02 28377.337975; dt=0.047977 Current time 2017-03-02 28377.385961; dt=0.047987 Current time 2017-03-02 28377.433957; dt=0.047996 Current time 2017-03-02 28377.481962; dt=0.048005 Current time 2017-03-02 28377.529976; dt=0.048014 Current time 2017-03-02 28377.577999; dt=0.048023 Current time 2017-03-02 28377.626031; dt=0.048032 Current time 2017-03-02 28377.674072; dt=0.048041 Current time 2017-03-02 28377.722122; dt=0.048050 Current time 2017-03-02 28377.770180; dt=0.048058 Current time 2017-03-02 28377.818247; dt=0.048067 Current time 2017-03-02 28377.866322; dt=0.048075 Current time 2017-03-02 28377.914405; dt=0.048084 Current time 2017-03-02 28377.962497; dt=0.048092 Current time 2017-03-02 28378.010597; dt=0.048100 Current time 2017-03-02 28378.058706; dt=0.048108 Current time 2017-03-02 28378.106822; dt=0.048116 Current time 2017-03-02 28378.154946; dt=0.048124 Current time 2017-03-02 28378.203078; dt=0.048132 Current time 2017-03-02 28378.251218; dt=0.048140 Current time 2017-03-02 28378.299366; dt=0.048148 Current time 2017-03-02 28378.347521; dt=0.048155 Current time 2017-03-02 28378.395684; dt=0.048163 Current time 2017-03-02 28378.443854; dt=0.048170 Current time 2017-03-02 28378.492031; dt=0.048178 Current time 2017-03-02 28378.540216; dt=0.048185 Current time 2017-03-02 28378.588408; dt=0.048192 Current time 2017-03-02 28378.636607; dt=0.048199 Current time 2017-03-02 28378.684814; dt=0.048206 Current time 2017-03-02 28378.733027; dt=0.048213 Current time 2017-03-02 28378.781247; dt=0.048220 Current time 2017-03-02 28378.829474; dt=0.048227 Current time 2017-03-02 28378.877707; dt=0.048234 Current time 2017-03-02 28378.925948; dt=0.048240 Current time 2017-03-02 28378.974195; dt=0.048247 Current time 2017-03-02 28379.022448; dt=0.048253 Current time 2017-03-02 28379.070708; dt=0.048260 Current time 2017-03-02 28379.118974; dt=0.048266 Current time 2017-03-02 28379.167247; dt=0.048273 Current time 2017-03-02 28379.215526; dt=0.048279 Current time 2017-03-02 28379.263810; dt=0.048285 Current time 2017-03-02 28379.312101; dt=0.048291 Current time 2017-03-02 28379.360398; dt=0.048297 Current time 2017-03-02 28379.408701; dt=0.048303 Current time 2017-03-02 28379.457010; dt=0.048309 Current time 2017-03-02 28379.505325; dt=0.048315 Current time 2017-03-02 28379.553645; dt=0.048320 Current time 2017-03-02 28379.601971; dt=0.048326 Current time 2017-03-02 28379.650303; dt=0.048332 Current time 2017-03-02 28379.698640; dt=0.048337 Current time 2017-03-02 28379.746983; dt=0.048343 Current time 2017-03-02 28379.795331; dt=0.048348 Current time 2017-03-02 28379.843684; dt=0.048353 Current time 2017-03-02 28379.892043; dt=0.048359 Current time 2017-03-02 28379.940407; dt=0.048364 Current time 2017-03-02 28379.988776; dt=0.048369 Current time 2017-03-02 28380.000000; dt=0.011224 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28380.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... Throttling dt to: 22.448E-03 date and time: 2017 3 2 28385.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28385.000000 Current time 2017-03-02 28380.022448; dt=0.022448 Throttling dt to: 44.895E-03 Current time 2017-03-02 28380.067343; dt=0.044895 Current time 2017-03-02 28380.115740; dt=0.048397 Current time 2017-03-02 28380.164127; dt=0.048387 Current time 2017-03-02 28380.212519; dt=0.048392 Current time 2017-03-02 28380.260916; dt=0.048397 Current time 2017-03-02 28380.309317; dt=0.048401 Current time 2017-03-02 28380.357724; dt=0.048406 Current time 2017-03-02 28380.406134; dt=0.048411 Current time 2017-03-02 28380.454550; dt=0.048415 Current time 2017-03-02 28380.502970; dt=0.048420 Current time 2017-03-02 28380.551394; dt=0.048424 Current time 2017-03-02 28380.599823; dt=0.048429 Current time 2017-03-02 28380.648256; dt=0.048433 Current time 2017-03-02 28380.696694; dt=0.048437 Current time 2017-03-02 28380.745135; dt=0.048442 Current time 2017-03-02 28380.793581; dt=0.048446 Current time 2017-03-02 28380.842031; dt=0.048450 Current time 2017-03-02 28380.890485; dt=0.048454 Current time 2017-03-02 28380.938943; dt=0.048458 Current time 2017-03-02 28380.987404; dt=0.048462 Current time 2017-03-02 28381.035870; dt=0.048466 Current time 2017-03-02 28381.084340; dt=0.048470 Current time 2017-03-02 28381.132813; dt=0.048473 Current time 2017-03-02 28381.181290; dt=0.048477 Current time 2017-03-02 28381.229771; dt=0.048481 Current time 2017-03-02 28381.278255; dt=0.048484 Current time 2017-03-02 28381.326743; dt=0.048488 Current time 2017-03-02 28381.375234; dt=0.048491 Current time 2017-03-02 28381.423729; dt=0.048495 Current time 2017-03-02 28381.472227; dt=0.048498 Current time 2017-03-02 28381.520729; dt=0.048502 Current time 2017-03-02 28381.569234; dt=0.048505 Current time 2017-03-02 28381.617742; dt=0.048508 Current time 2017-03-02 28381.666254; dt=0.048512 Current time 2017-03-02 28381.714769; dt=0.048515 Current time 2017-03-02 28381.763286; dt=0.048518 Current time 2017-03-02 28381.811807; dt=0.048521 Current time 2017-03-02 28381.860331; dt=0.048524 Current time 2017-03-02 28381.908859; dt=0.048527 Current time 2017-03-02 28381.957389; dt=0.048530 Current time 2017-03-02 28382.005921; dt=0.048533 Current time 2017-03-02 28382.054457; dt=0.048536 Current time 2017-03-02 28382.102996; dt=0.048539 Current time 2017-03-02 28382.151537; dt=0.048541 Current time 2017-03-02 28382.200082; dt=0.048544 Current time 2017-03-02 28382.248629; dt=0.048547 Current time 2017-03-02 28382.297178; dt=0.048550 Current time 2017-03-02 28382.345730; dt=0.048552 Current time 2017-03-02 28382.394285; dt=0.048555 Current time 2017-03-02 28382.442843; dt=0.048557 Current time 2017-03-02 28382.491403; dt=0.048560 Current time 2017-03-02 28382.539965; dt=0.048562 Current time 2017-03-02 28382.588530; dt=0.048565 Current time 2017-03-02 28382.637097; dt=0.048567 Current time 2017-03-02 28382.685667; dt=0.048570 Current time 2017-03-02 28382.734239; dt=0.048572 Current time 2017-03-02 28382.782813; dt=0.048574 Current time 2017-03-02 28382.831390; dt=0.048577 Current time 2017-03-02 28382.879969; dt=0.048579 Current time 2017-03-02 28382.928550; dt=0.048581 Current time 2017-03-02 28382.977133; dt=0.048583 Current time 2017-03-02 28383.025718; dt=0.048585 Current time 2017-03-02 28383.074306; dt=0.048587 Current time 2017-03-02 28383.122895; dt=0.048589 Current time 2017-03-02 28383.171486; dt=0.048591 Current time 2017-03-02 28383.220080; dt=0.048593 Current time 2017-03-02 28383.268675; dt=0.048595 Current time 2017-03-02 28383.317273; dt=0.048597 Current time 2017-03-02 28383.365872; dt=0.048599 Current time 2017-03-02 28383.414473; dt=0.048601 Current time 2017-03-02 28383.463076; dt=0.048603 Current time 2017-03-02 28383.511681; dt=0.048605 Current time 2017-03-02 28383.560287; dt=0.048606 Current time 2017-03-02 28383.608895; dt=0.048608 Current time 2017-03-02 28383.657505; dt=0.048610 Current time 2017-03-02 28383.706117; dt=0.048612 Current time 2017-03-02 28383.754730; dt=0.048613 Current time 2017-03-02 28383.803345; dt=0.048615 Current time 2017-03-02 28383.851962; dt=0.048616 Current time 2017-03-02 28383.900580; dt=0.048618 Current time 2017-03-02 28383.949199; dt=0.048620 Current time 2017-03-02 28383.997820; dt=0.048621 Current time 2017-03-02 28384.046443; dt=0.048623 Current time 2017-03-02 28384.095067; dt=0.048624 Current time 2017-03-02 28384.143692; dt=0.048625 Current time 2017-03-02 28384.192319; dt=0.048627 Current time 2017-03-02 28384.240947; dt=0.048628 Current time 2017-03-02 28384.289577; dt=0.048630 Current time 2017-03-02 28384.338208; dt=0.048631 Current time 2017-03-02 28384.386840; dt=0.048632 Current time 2017-03-02 28384.435474; dt=0.048633 Current time 2017-03-02 28384.484108; dt=0.048635 Current time 2017-03-02 28384.532744; dt=0.048636 Current time 2017-03-02 28384.581381; dt=0.048637 Current time 2017-03-02 28384.630020; dt=0.048638 Current time 2017-03-02 28384.678659; dt=0.048639 Current time 2017-03-02 28384.727300; dt=0.048641 Current time 2017-03-02 28384.775942; dt=0.048642 Current time 2017-03-02 28384.824584; dt=0.048643 Current time 2017-03-02 28384.873228; dt=0.048644 Current time 2017-03-02 28384.921873; dt=0.048645 Current time 2017-03-02 28384.970519; dt=0.048646 Current time 2017-03-02 28385.000000; dt=0.029481 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28385.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28390.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28390.000000 Current time 2017-03-02 28385.048781; dt=0.048781 Current time 2017-03-02 28385.097424; dt=0.048643 Current time 2017-03-02 28385.146074; dt=0.048650 Current time 2017-03-02 28385.194724; dt=0.048650 Current time 2017-03-02 28385.243375; dt=0.048651 Current time 2017-03-02 28385.292028; dt=0.048652 Current time 2017-03-02 28385.340681; dt=0.048653 Current time 2017-03-02 28385.389335; dt=0.048654 Current time 2017-03-02 28385.437990; dt=0.048655 Current time 2017-03-02 28385.486646; dt=0.048656 Current time 2017-03-02 28385.535302; dt=0.048657 Current time 2017-03-02 28385.583960; dt=0.048657 Current time 2017-03-02 28385.632618; dt=0.048658 Current time 2017-03-02 28385.681277; dt=0.048659 Current time 2017-03-02 28385.729937; dt=0.048660 Current time 2017-03-02 28385.778597; dt=0.048660 Current time 2017-03-02 28385.827258; dt=0.048661 Current time 2017-03-02 28385.875920; dt=0.048662 Current time 2017-03-02 28385.924583; dt=0.048663 Current time 2017-03-02 28385.973246; dt=0.048663 Current time 2017-03-02 28386.021910; dt=0.048664 Current time 2017-03-02 28386.070575; dt=0.048665 Current time 2017-03-02 28386.119240; dt=0.048665 Current time 2017-03-02 28386.167906; dt=0.048666 Current time 2017-03-02 28386.216573; dt=0.048667 Current time 2017-03-02 28386.265240; dt=0.048667 Current time 2017-03-02 28386.313908; dt=0.048668 Current time 2017-03-02 28386.362576; dt=0.048668 Current time 2017-03-02 28386.411245; dt=0.048669 Current time 2017-03-02 28386.459914; dt=0.048669 Current time 2017-03-02 28386.508584; dt=0.048670 Current time 2017-03-02 28386.557255; dt=0.048670 Current time 2017-03-02 28386.605926; dt=0.048671 Current time 2017-03-02 28386.654597; dt=0.048671 Current time 2017-03-02 28386.703269; dt=0.048672 Current time 2017-03-02 28386.751941; dt=0.048672 Current time 2017-03-02 28386.800614; dt=0.048673 Current time 2017-03-02 28386.849287; dt=0.048673 Current time 2017-03-02 28386.897961; dt=0.048674 Current time 2017-03-02 28386.946635; dt=0.048674 Current time 2017-03-02 28386.995310; dt=0.048674 Current time 2017-03-02 28387.043984; dt=0.048675 Current time 2017-03-02 28387.092660; dt=0.048675 Current time 2017-03-02 28387.141335; dt=0.048676 Current time 2017-03-02 28387.190011; dt=0.048676 Current time 2017-03-02 28387.238688; dt=0.048676 Current time 2017-03-02 28387.287365; dt=0.048677 Current time 2017-03-02 28387.336042; dt=0.048677 Current time 2017-03-02 28387.384719; dt=0.048677 Current time 2017-03-02 28387.433397; dt=0.048678 Current time 2017-03-02 28387.482075; dt=0.048678 Current time 2017-03-02 28387.530754; dt=0.048678 Current time 2017-03-02 28387.579433; dt=0.048679 Current time 2017-03-02 28387.628112; dt=0.048679 Current time 2017-03-02 28387.676791; dt=0.048679 Current time 2017-03-02 28387.725471; dt=0.048680 Current time 2017-03-02 28387.774151; dt=0.048680 Current time 2017-03-02 28387.822831; dt=0.048680 Current time 2017-03-02 28387.871512; dt=0.048681 Current time 2017-03-02 28387.920193; dt=0.048681 Current time 2017-03-02 28387.968874; dt=0.048681 Current time 2017-03-02 28388.017555; dt=0.048681 Current time 2017-03-02 28388.066237; dt=0.048682 Current time 2017-03-02 28388.114918; dt=0.048682 Current time 2017-03-02 28388.163600; dt=0.048682 Current time 2017-03-02 28388.212282; dt=0.048682 Current time 2017-03-02 28388.260965; dt=0.048682 Current time 2017-03-02 28388.309647; dt=0.048683 Current time 2017-03-02 28388.358330; dt=0.048683 Current time 2017-03-02 28388.407013; dt=0.048683 Current time 2017-03-02 28388.455696; dt=0.048683 Current time 2017-03-02 28388.504379; dt=0.048683 Current time 2017-03-02 28388.553063; dt=0.048683 Current time 2017-03-02 28388.601746; dt=0.048684 Current time 2017-03-02 28388.650430; dt=0.048684 Current time 2017-03-02 28388.699114; dt=0.048684 Current time 2017-03-02 28388.747798; dt=0.048684 Current time 2017-03-02 28388.796482; dt=0.048684 Current time 2017-03-02 28388.845167; dt=0.048684 Current time 2017-03-02 28388.893851; dt=0.048685 Current time 2017-03-02 28388.942536; dt=0.048685 Current time 2017-03-02 28388.991221; dt=0.048685 Current time 2017-03-02 28389.039906; dt=0.048685 Current time 2017-03-02 28389.088591; dt=0.048685 Current time 2017-03-02 28389.137276; dt=0.048685 Current time 2017-03-02 28389.185961; dt=0.048685 Current time 2017-03-02 28389.234646; dt=0.048685 Current time 2017-03-02 28389.283331; dt=0.048685 Current time 2017-03-02 28389.332016; dt=0.048685 Current time 2017-03-02 28389.380702; dt=0.048685 Current time 2017-03-02 28389.429387; dt=0.048685 Current time 2017-03-02 28389.478073; dt=0.048685 Current time 2017-03-02 28389.526758; dt=0.048686 Current time 2017-03-02 28389.575444; dt=0.048686 Current time 2017-03-02 28389.624129; dt=0.048686 Current time 2017-03-02 28389.672815; dt=0.048686 Current time 2017-03-02 28389.721501; dt=0.048686 Current time 2017-03-02 28389.770187; dt=0.048686 Current time 2017-03-02 28389.818872; dt=0.048686 Current time 2017-03-02 28389.867558; dt=0.048686 Current time 2017-03-02 28389.916244; dt=0.048686 Current time 2017-03-02 28389.964931; dt=0.048686 Current time 2017-03-02 28390.000000; dt=0.035069 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28390.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28395.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28395.000000 Current time 2017-03-02 28390.048778; dt=0.048778 Current time 2017-03-02 28390.097460; dt=0.048682 Current time 2017-03-02 28390.146147; dt=0.048687 Current time 2017-03-02 28390.194833; dt=0.048686 Current time 2017-03-02 28390.243519; dt=0.048686 Current time 2017-03-02 28390.292205; dt=0.048686 Current time 2017-03-02 28390.340892; dt=0.048686 Current time 2017-03-02 28390.389578; dt=0.048686 Current time 2017-03-02 28390.438265; dt=0.048686 Current time 2017-03-02 28390.486951; dt=0.048686 Current time 2017-03-02 28390.535638; dt=0.048687 Current time 2017-03-02 28390.584324; dt=0.048687 Current time 2017-03-02 28390.633011; dt=0.048687 Current time 2017-03-02 28390.681698; dt=0.048687 Current time 2017-03-02 28390.730384; dt=0.048687 Current time 2017-03-02 28390.779071; dt=0.048687 Current time 2017-03-02 28390.827758; dt=0.048687 Current time 2017-03-02 28390.876445; dt=0.048687 Current time 2017-03-02 28390.925132; dt=0.048687 Current time 2017-03-02 28390.973819; dt=0.048687 Current time 2017-03-02 28391.022506; dt=0.048687 Current time 2017-03-02 28391.071193; dt=0.048687 Current time 2017-03-02 28391.119880; dt=0.048687 Current time 2017-03-02 28391.168567; dt=0.048687 Current time 2017-03-02 28391.217255; dt=0.048687 Current time 2017-03-02 28391.265942; dt=0.048687 Current time 2017-03-02 28391.314629; dt=0.048687 Current time 2017-03-02 28391.363317; dt=0.048688 Current time 2017-03-02 28391.412005; dt=0.048688 Current time 2017-03-02 28391.460692; dt=0.048688 Current time 2017-03-02 28391.509380; dt=0.048688 Current time 2017-03-02 28391.558068; dt=0.048688 Current time 2017-03-02 28391.606756; dt=0.048688 Current time 2017-03-02 28391.655443; dt=0.048688 Current time 2017-03-02 28391.704131; dt=0.048688 Current time 2017-03-02 28391.752819; dt=0.048688 Current time 2017-03-02 28391.801507; dt=0.048688 Current time 2017-03-02 28391.850195; dt=0.048688 Current time 2017-03-02 28391.898883; dt=0.048688 Current time 2017-03-02 28391.947571; dt=0.048688 Current time 2017-03-02 28391.996259; dt=0.048688 Current time 2017-03-02 28392.044947; dt=0.048688 Current time 2017-03-02 28392.093635; dt=0.048688 Current time 2017-03-02 28392.142323; dt=0.048688 Current time 2017-03-02 28392.191011; dt=0.048688 Current time 2017-03-02 28392.239699; dt=0.048688 Current time 2017-03-02 28392.288387; dt=0.048688 Current time 2017-03-02 28392.337075; dt=0.048688 Current time 2017-03-02 28392.385763; dt=0.048688 Current time 2017-03-02 28392.434451; dt=0.048688 Current time 2017-03-02 28392.483140; dt=0.048688 Current time 2017-03-02 28392.531828; dt=0.048688 Current time 2017-03-02 28392.580516; dt=0.048688 Current time 2017-03-02 28392.629204; dt=0.048688 Current time 2017-03-02 28392.677892; dt=0.048688 Current time 2017-03-02 28392.726580; dt=0.048688 Current time 2017-03-02 28392.775268; dt=0.048688 Current time 2017-03-02 28392.823956; dt=0.048688 Current time 2017-03-02 28392.872644; dt=0.048688 Current time 2017-03-02 28392.921331; dt=0.048688 Current time 2017-03-02 28392.970019; dt=0.048688 Current time 2017-03-02 28393.018707; dt=0.048688 Current time 2017-03-02 28393.067395; dt=0.048688 Current time 2017-03-02 28393.116082; dt=0.048688 Current time 2017-03-02 28393.164770; dt=0.048687 Current time 2017-03-02 28393.213457; dt=0.048687 Current time 2017-03-02 28393.262144; dt=0.048687 Current time 2017-03-02 28393.310832; dt=0.048687 Current time 2017-03-02 28393.359519; dt=0.048687 Current time 2017-03-02 28393.408206; dt=0.048687 Current time 2017-03-02 28393.456892; dt=0.048687 Current time 2017-03-02 28393.505579; dt=0.048687 Current time 2017-03-02 28393.554266; dt=0.048687 Current time 2017-03-02 28393.602952; dt=0.048686 Current time 2017-03-02 28393.651638; dt=0.048686 Current time 2017-03-02 28393.700325; dt=0.048686 Current time 2017-03-02 28393.749010; dt=0.048686 Current time 2017-03-02 28393.797696; dt=0.048686 Current time 2017-03-02 28393.846382; dt=0.048686 Current time 2017-03-02 28393.895067; dt=0.048685 Current time 2017-03-02 28393.943752; dt=0.048685 Current time 2017-03-02 28393.992437; dt=0.048685 Current time 2017-03-02 28394.041122; dt=0.048685 Current time 2017-03-02 28394.089806; dt=0.048684 Current time 2017-03-02 28394.138491; dt=0.048684 Current time 2017-03-02 28394.187174; dt=0.048684 Current time 2017-03-02 28394.235858; dt=0.048684 Current time 2017-03-02 28394.284541; dt=0.048683 Current time 2017-03-02 28394.333224; dt=0.048683 Current time 2017-03-02 28394.381907; dt=0.048683 Current time 2017-03-02 28394.430590; dt=0.048682 Current time 2017-03-02 28394.479272; dt=0.048682 Current time 2017-03-02 28394.527953; dt=0.048682 Current time 2017-03-02 28394.576635; dt=0.048681 Current time 2017-03-02 28394.625316; dt=0.048681 Current time 2017-03-02 28394.673996; dt=0.048681 Current time 2017-03-02 28394.722676; dt=0.048680 Current time 2017-03-02 28394.771356; dt=0.048680 Current time 2017-03-02 28394.820036; dt=0.048679 Current time 2017-03-02 28394.868715; dt=0.048679 Current time 2017-03-02 28394.917393; dt=0.048679 Current time 2017-03-02 28394.966071; dt=0.048678 Current time 2017-03-02 28395.000000; dt=0.033929 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28395.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28400.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28400.000000 Current time 2017-03-02 28395.048778; dt=0.048778 Current time 2017-03-02 28395.097450; dt=0.048672 Current time 2017-03-02 28395.146127; dt=0.048677 Current time 2017-03-02 28395.194803; dt=0.048676 Current time 2017-03-02 28395.243479; dt=0.048676 Current time 2017-03-02 28395.292154; dt=0.048675 Current time 2017-03-02 28395.340828; dt=0.048675 Current time 2017-03-02 28395.389503; dt=0.048674 Current time 2017-03-02 28395.438176; dt=0.048674 Current time 2017-03-02 28395.486850; dt=0.048673 Current time 2017-03-02 28395.535523; dt=0.048673 Current time 2017-03-02 28395.584195; dt=0.048672 Current time 2017-03-02 28395.632867; dt=0.048672 Current time 2017-03-02 28395.681539; dt=0.048671 Current time 2017-03-02 28395.730210; dt=0.048671 Current time 2017-03-02 28395.778880; dt=0.048671 Current time 2017-03-02 28395.827550; dt=0.048670 Current time 2017-03-02 28395.876220; dt=0.048670 Current time 2017-03-02 28395.924889; dt=0.048669 Current time 2017-03-02 28395.973558; dt=0.048669 Current time 2017-03-02 28396.022226; dt=0.048668 Current time 2017-03-02 28396.070893; dt=0.048668 Current time 2017-03-02 28396.119561; dt=0.048667 Current time 2017-03-02 28396.168228; dt=0.048667 Current time 2017-03-02 28396.216894; dt=0.048666 Current time 2017-03-02 28396.265560; dt=0.048666 Current time 2017-03-02 28396.314225; dt=0.048665 Current time 2017-03-02 28396.362890; dt=0.048665 Current time 2017-03-02 28396.411555; dt=0.048665 Current time 2017-03-02 28396.460219; dt=0.048664 Current time 2017-03-02 28396.508883; dt=0.048664 Current time 2017-03-02 28396.557546; dt=0.048663 Current time 2017-03-02 28396.606209; dt=0.048663 Current time 2017-03-02 28396.654871; dt=0.048662 Current time 2017-03-02 28396.703533; dt=0.048662 Current time 2017-03-02 28396.752195; dt=0.048662 Current time 2017-03-02 28396.800856; dt=0.048661 Current time 2017-03-02 28396.849517; dt=0.048661 Current time 2017-03-02 28396.898177; dt=0.048660 Current time 2017-03-02 28396.946838; dt=0.048660 Current time 2017-03-02 28396.995497; dt=0.048660 Current time 2017-03-02 28397.044157; dt=0.048659 Current time 2017-03-02 28397.092816; dt=0.048659 Current time 2017-03-02 28397.141474; dt=0.048659 Current time 2017-03-02 28397.190133; dt=0.048658 Current time 2017-03-02 28397.238791; dt=0.048658 Current time 2017-03-02 28397.287448; dt=0.048658 Current time 2017-03-02 28397.336106; dt=0.048657 Current time 2017-03-02 28397.384762; dt=0.048657 Current time 2017-03-02 28397.433419; dt=0.048657 Current time 2017-03-02 28397.482076; dt=0.048656 Current time 2017-03-02 28397.530732; dt=0.048656 Current time 2017-03-02 28397.579387; dt=0.048656 Current time 2017-03-02 28397.628043; dt=0.048655 Current time 2017-03-02 28397.676698; dt=0.048655 Current time 2017-03-02 28397.725353; dt=0.048655 Current time 2017-03-02 28397.774007; dt=0.048655 Current time 2017-03-02 28397.822661; dt=0.048654 Current time 2017-03-02 28397.871315; dt=0.048654 Current time 2017-03-02 28397.919969; dt=0.048654 Current time 2017-03-02 28397.968622; dt=0.048653 Current time 2017-03-02 28398.017275; dt=0.048653 Current time 2017-03-02 28398.065928; dt=0.048653 Current time 2017-03-02 28398.114581; dt=0.048653 Current time 2017-03-02 28398.163233; dt=0.048652 Current time 2017-03-02 28398.211885; dt=0.048652 Current time 2017-03-02 28398.260537; dt=0.048652 Current time 2017-03-02 28398.309188; dt=0.048651 Current time 2017-03-02 28398.357839; dt=0.048651 Current time 2017-03-02 28398.406490; dt=0.048651 Current time 2017-03-02 28398.455141; dt=0.048651 Current time 2017-03-02 28398.503791; dt=0.048650 Current time 2017-03-02 28398.552441; dt=0.048650 Current time 2017-03-02 28398.601091; dt=0.048650 Current time 2017-03-02 28398.649740; dt=0.048650 Current time 2017-03-02 28398.698390; dt=0.048649 Current time 2017-03-02 28398.747039; dt=0.048649 Current time 2017-03-02 28398.795687; dt=0.048649 Current time 2017-03-02 28398.844336; dt=0.048648 Current time 2017-03-02 28398.892984; dt=0.048648 Current time 2017-03-02 28398.941632; dt=0.048648 Current time 2017-03-02 28398.990279; dt=0.048648 Current time 2017-03-02 28399.038927; dt=0.048647 Current time 2017-03-02 28399.087574; dt=0.048647 Current time 2017-03-02 28399.136221; dt=0.048647 Current time 2017-03-02 28399.184867; dt=0.048647 Current time 2017-03-02 28399.233513; dt=0.048646 Current time 2017-03-02 28399.282159; dt=0.048646 Current time 2017-03-02 28399.330805; dt=0.048646 Current time 2017-03-02 28399.379451; dt=0.048645 Current time 2017-03-02 28399.428096; dt=0.048645 Current time 2017-03-02 28399.476741; dt=0.048645 Current time 2017-03-02 28399.525385; dt=0.048645 Current time 2017-03-02 28399.574030; dt=0.048644 Current time 2017-03-02 28399.622674; dt=0.048644 Current time 2017-03-02 28399.671318; dt=0.048644 Current time 2017-03-02 28399.719961; dt=0.048644 Current time 2017-03-02 28399.768605; dt=0.048643 Current time 2017-03-02 28399.817248; dt=0.048643 Current time 2017-03-02 28399.865891; dt=0.048643 Current time 2017-03-02 28399.914533; dt=0.048643 Current time 2017-03-02 28399.963175; dt=0.048642 Current time 2017-03-02 28400.000000; dt=0.036825 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28400.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28405.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28405.000000 Current time 2017-03-02 28400.048720; dt=0.048720 Current time 2017-03-02 28400.097358; dt=0.048638 Current time 2017-03-02 28400.146000; dt=0.048642 Current time 2017-03-02 28400.194640; dt=0.048641 Current time 2017-03-02 28400.243281; dt=0.048641 Current time 2017-03-02 28400.291922; dt=0.048640 Current time 2017-03-02 28400.340562; dt=0.048640 Current time 2017-03-02 28400.389202; dt=0.048640 Current time 2017-03-02 28400.437841; dt=0.048640 Current time 2017-03-02 28400.486481; dt=0.048639 Current time 2017-03-02 28400.535120; dt=0.048639 Current time 2017-03-02 28400.583759; dt=0.048639 Current time 2017-03-02 28400.632397; dt=0.048639 Current time 2017-03-02 28400.681036; dt=0.048638 Current time 2017-03-02 28400.729674; dt=0.048638 Current time 2017-03-02 28400.778312; dt=0.048638 Current time 2017-03-02 28400.826949; dt=0.048638 Current time 2017-03-02 28400.875587; dt=0.048637 Current time 2017-03-02 28400.924224; dt=0.048637 Current time 2017-03-02 28400.972861; dt=0.048637 Current time 2017-03-02 28401.021498; dt=0.048637 Current time 2017-03-02 28401.070134; dt=0.048636 Current time 2017-03-02 28401.118770; dt=0.048636 Current time 2017-03-02 28401.167406; dt=0.048636 Current time 2017-03-02 28401.216042; dt=0.048636 Current time 2017-03-02 28401.264677; dt=0.048635 Current time 2017-03-02 28401.313312; dt=0.048635 Current time 2017-03-02 28401.361947; dt=0.048635 Current time 2017-03-02 28401.410582; dt=0.048635 Current time 2017-03-02 28401.459217; dt=0.048634 Current time 2017-03-02 28401.507851; dt=0.048634 Current time 2017-03-02 28401.556485; dt=0.048634 Current time 2017-03-02 28401.605118; dt=0.048634 Current time 2017-03-02 28401.653752; dt=0.048633 Current time 2017-03-02 28401.702385; dt=0.048633 Current time 2017-03-02 28401.751018; dt=0.048633 Current time 2017-03-02 28401.799651; dt=0.048633 Current time 2017-03-02 28401.848283; dt=0.048633 Current time 2017-03-02 28401.896916; dt=0.048632 Current time 2017-03-02 28401.945548; dt=0.048632 Current time 2017-03-02 28401.994180; dt=0.048632 Current time 2017-03-02 28402.042811; dt=0.048632 Current time 2017-03-02 28402.091443; dt=0.048631 Current time 2017-03-02 28402.140074; dt=0.048631 Current time 2017-03-02 28402.188705; dt=0.048631 Current time 2017-03-02 28402.237335; dt=0.048631 Current time 2017-03-02 28402.285966; dt=0.048630 Current time 2017-03-02 28402.334596; dt=0.048630 Current time 2017-03-02 28402.383226; dt=0.048630 Current time 2017-03-02 28402.431856; dt=0.048630 Current time 2017-03-02 28402.480485; dt=0.048630 Current time 2017-03-02 28402.529114; dt=0.048629 Current time 2017-03-02 28402.577743; dt=0.048629 Current time 2017-03-02 28402.626372; dt=0.048629 Current time 2017-03-02 28402.675001; dt=0.048629 Current time 2017-03-02 28402.723629; dt=0.048628 Current time 2017-03-02 28402.772258; dt=0.048628 Current time 2017-03-02 28402.820886; dt=0.048628 Current time 2017-03-02 28402.869513; dt=0.048628 Current time 2017-03-02 28402.918141; dt=0.048628 Current time 2017-03-02 28402.966768; dt=0.048627 Current time 2017-03-02 28403.015395; dt=0.048627 Current time 2017-03-02 28403.064022; dt=0.048627 Current time 2017-03-02 28403.112649; dt=0.048627 Current time 2017-03-02 28403.161276; dt=0.048627 Current time 2017-03-02 28403.209902; dt=0.048626 Current time 2017-03-02 28403.258528; dt=0.048626 Current time 2017-03-02 28403.307154; dt=0.048626 Current time 2017-03-02 28403.355780; dt=0.048626 Current time 2017-03-02 28403.404405; dt=0.048625 Current time 2017-03-02 28403.453030; dt=0.048625 Current time 2017-03-02 28403.501655; dt=0.048625 Current time 2017-03-02 28403.550280; dt=0.048625 Current time 2017-03-02 28403.598905; dt=0.048625 Current time 2017-03-02 28403.647529; dt=0.048624 Current time 2017-03-02 28403.696154; dt=0.048624 Current time 2017-03-02 28403.744778; dt=0.048624 Current time 2017-03-02 28403.793402; dt=0.048624 Current time 2017-03-02 28403.842025; dt=0.048624 Current time 2017-03-02 28403.890649; dt=0.048624 Current time 2017-03-02 28403.939272; dt=0.048623 Current time 2017-03-02 28403.987895; dt=0.048623 Current time 2017-03-02 28404.036518; dt=0.048623 Current time 2017-03-02 28404.085141; dt=0.048623 Current time 2017-03-02 28404.133764; dt=0.048623 Current time 2017-03-02 28404.182386; dt=0.048622 Current time 2017-03-02 28404.231008; dt=0.048622 Current time 2017-03-02 28404.279630; dt=0.048622 Current time 2017-03-02 28404.328252; dt=0.048622 Current time 2017-03-02 28404.376874; dt=0.048622 Current time 2017-03-02 28404.425496; dt=0.048622 Current time 2017-03-02 28404.474117; dt=0.048621 Current time 2017-03-02 28404.522738; dt=0.048621 Current time 2017-03-02 28404.571359; dt=0.048621 Current time 2017-03-02 28404.619980; dt=0.048621 Current time 2017-03-02 28404.668600; dt=0.048621 Current time 2017-03-02 28404.717221; dt=0.048620 Current time 2017-03-02 28404.765841; dt=0.048620 Current time 2017-03-02 28404.814461; dt=0.048620 Current time 2017-03-02 28404.863081; dt=0.048620 Current time 2017-03-02 28404.911701; dt=0.048620 Current time 2017-03-02 28404.960321; dt=0.048620 Current time 2017-03-02 28405.000000; dt=0.039679 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28405.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28410.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28410.000000 Current time 2017-03-02 28405.048677; dt=0.048677 Current time 2017-03-02 28405.097294; dt=0.048617 Current time 2017-03-02 28405.145913; dt=0.048619 Current time 2017-03-02 28405.194532; dt=0.048619 Current time 2017-03-02 28405.243150; dt=0.048619 Current time 2017-03-02 28405.291769; dt=0.048618 Current time 2017-03-02 28405.340387; dt=0.048618 Current time 2017-03-02 28405.389005; dt=0.048618 Current time 2017-03-02 28405.437623; dt=0.048618 Current time 2017-03-02 28405.486241; dt=0.048618 Current time 2017-03-02 28405.534859; dt=0.048618 Current time 2017-03-02 28405.583477; dt=0.048618 Current time 2017-03-02 28405.632094; dt=0.048617 Current time 2017-03-02 28405.680711; dt=0.048617 Current time 2017-03-02 28405.729329; dt=0.048617 Current time 2017-03-02 28405.777946; dt=0.048617 Current time 2017-03-02 28405.826563; dt=0.048617 Current time 2017-03-02 28405.875179; dt=0.048617 Current time 2017-03-02 28405.923796; dt=0.048617 Current time 2017-03-02 28405.972413; dt=0.048617 Current time 2017-03-02 28406.021029; dt=0.048616 Current time 2017-03-02 28406.069645; dt=0.048616 Current time 2017-03-02 28406.118261; dt=0.048616 Current time 2017-03-02 28406.166877; dt=0.048616 Current time 2017-03-02 28406.215493; dt=0.048616 Current time 2017-03-02 28406.264109; dt=0.048616 Current time 2017-03-02 28406.312724; dt=0.048616 Current time 2017-03-02 28406.361340; dt=0.048615 Current time 2017-03-02 28406.409955; dt=0.048615 Current time 2017-03-02 28406.458570; dt=0.048615 Current time 2017-03-02 28406.507185; dt=0.048615 Current time 2017-03-02 28406.555800; dt=0.048615 Current time 2017-03-02 28406.604415; dt=0.048615 Current time 2017-03-02 28406.653030; dt=0.048615 Current time 2017-03-02 28406.701644; dt=0.048615 Current time 2017-03-02 28406.750259; dt=0.048614 Current time 2017-03-02 28406.798873; dt=0.048614 Current time 2017-03-02 28406.847487; dt=0.048614 Current time 2017-03-02 28406.896101; dt=0.048614 Current time 2017-03-02 28406.944715; dt=0.048614 Current time 2017-03-02 28406.993329; dt=0.048614 Current time 2017-03-02 28407.041943; dt=0.048614 Current time 2017-03-02 28407.090556; dt=0.048614 Current time 2017-03-02 28407.139170; dt=0.048613 Current time 2017-03-02 28407.187783; dt=0.048613 Current time 2017-03-02 28407.236396; dt=0.048613 Current time 2017-03-02 28407.285009; dt=0.048613 Current time 2017-03-02 28407.333622; dt=0.048613 Current time 2017-03-02 28407.382235; dt=0.048613 Current time 2017-03-02 28407.430848; dt=0.048613 Current time 2017-03-02 28407.479461; dt=0.048613 Current time 2017-03-02 28407.528073; dt=0.048613 Current time 2017-03-02 28407.576686; dt=0.048612 Current time 2017-03-02 28407.625298; dt=0.048612 Current time 2017-03-02 28407.673910; dt=0.048612 Current time 2017-03-02 28407.722522; dt=0.048612 Current time 2017-03-02 28407.771134; dt=0.048612 Current time 2017-03-02 28407.819746; dt=0.048612 Current time 2017-03-02 28407.868358; dt=0.048612 Current time 2017-03-02 28407.916969; dt=0.048612 Current time 2017-03-02 28407.965581; dt=0.048612 Current time 2017-03-02 28408.014192; dt=0.048611 Current time 2017-03-02 28408.062804; dt=0.048611 Current time 2017-03-02 28408.111415; dt=0.048611 Current time 2017-03-02 28408.160026; dt=0.048611 Current time 2017-03-02 28408.208637; dt=0.048611 Current time 2017-03-02 28408.257248; dt=0.048611 Current time 2017-03-02 28408.305859; dt=0.048611 Current time 2017-03-02 28408.354470; dt=0.048611 Current time 2017-03-02 28408.403081; dt=0.048611 Current time 2017-03-02 28408.451691; dt=0.048611 Current time 2017-03-02 28408.500302; dt=0.048610 Current time 2017-03-02 28408.548912; dt=0.048610 Current time 2017-03-02 28408.597522; dt=0.048610 Current time 2017-03-02 28408.646132; dt=0.048610 Current time 2017-03-02 28408.694742; dt=0.048610 Current time 2017-03-02 28408.743352; dt=0.048610 Current time 2017-03-02 28408.791962; dt=0.048610 Current time 2017-03-02 28408.840572; dt=0.048610 Current time 2017-03-02 28408.889182; dt=0.048610 Current time 2017-03-02 28408.937791; dt=0.048610 Current time 2017-03-02 28408.986401; dt=0.048609 Current time 2017-03-02 28409.035010; dt=0.048609 Current time 2017-03-02 28409.083619; dt=0.048609 Current time 2017-03-02 28409.132229; dt=0.048609 Current time 2017-03-02 28409.180838; dt=0.048609 Current time 2017-03-02 28409.229447; dt=0.048609 Current time 2017-03-02 28409.278056; dt=0.048609 Current time 2017-03-02 28409.326665; dt=0.048609 Current time 2017-03-02 28409.375273; dt=0.048609 Current time 2017-03-02 28409.423882; dt=0.048609 Current time 2017-03-02 28409.472491; dt=0.048609 Current time 2017-03-02 28409.521099; dt=0.048608 Current time 2017-03-02 28409.569707; dt=0.048608 Current time 2017-03-02 28409.618316; dt=0.048608 Current time 2017-03-02 28409.666924; dt=0.048608 Current time 2017-03-02 28409.715532; dt=0.048608 Current time 2017-03-02 28409.764140; dt=0.048608 Current time 2017-03-02 28409.812748; dt=0.048608 Current time 2017-03-02 28409.861356; dt=0.048608 Current time 2017-03-02 28409.909964; dt=0.048608 Current time 2017-03-02 28409.958572; dt=0.048608 Current time 2017-03-02 28410.000000; dt=0.041428 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28410.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28415.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28415.000000 Current time 2017-03-02 28410.048653; dt=0.048653 Current time 2017-03-02 28410.097259; dt=0.048605 Current time 2017-03-02 28410.145866; dt=0.048608 Current time 2017-03-02 28410.194474; dt=0.048607 Current time 2017-03-02 28410.243081; dt=0.048607 Current time 2017-03-02 28410.291688; dt=0.048607 Current time 2017-03-02 28410.340295; dt=0.048607 Current time 2017-03-02 28410.388902; dt=0.048607 Current time 2017-03-02 28410.437509; dt=0.048607 Current time 2017-03-02 28410.486116; dt=0.048607 Current time 2017-03-02 28410.534723; dt=0.048607 Current time 2017-03-02 28410.583329; dt=0.048607 Current time 2017-03-02 28410.631936; dt=0.048607 Current time 2017-03-02 28410.680543; dt=0.048607 Current time 2017-03-02 28410.729149; dt=0.048607 Current time 2017-03-02 28410.777756; dt=0.048606 Current time 2017-03-02 28410.826362; dt=0.048606 Current time 2017-03-02 28410.874969; dt=0.048606 Current time 2017-03-02 28410.923575; dt=0.048606 Current time 2017-03-02 28410.972181; dt=0.048606 Current time 2017-03-02 28411.020787; dt=0.048606 Current time 2017-03-02 28411.069393; dt=0.048606 Current time 2017-03-02 28411.117999; dt=0.048606 Current time 2017-03-02 28411.166605; dt=0.048606 Current time 2017-03-02 28411.215211; dt=0.048606 Current time 2017-03-02 28411.263817; dt=0.048606 Current time 2017-03-02 28411.312423; dt=0.048606 Current time 2017-03-02 28411.361028; dt=0.048606 Current time 2017-03-02 28411.409634; dt=0.048606 Current time 2017-03-02 28411.458239; dt=0.048606 Current time 2017-03-02 28411.506845; dt=0.048605 Current time 2017-03-02 28411.555450; dt=0.048605 Current time 2017-03-02 28411.604056; dt=0.048605 Current time 2017-03-02 28411.652661; dt=0.048605 Current time 2017-03-02 28411.701266; dt=0.048605 Current time 2017-03-02 28411.749871; dt=0.048605 Current time 2017-03-02 28411.798476; dt=0.048605 Current time 2017-03-02 28411.847081; dt=0.048605 Current time 2017-03-02 28411.895686; dt=0.048605 Current time 2017-03-02 28411.944291; dt=0.048605 Current time 2017-03-02 28411.992896; dt=0.048605 Current time 2017-03-02 28412.041501; dt=0.048605 Current time 2017-03-02 28412.090105; dt=0.048605 Current time 2017-03-02 28412.138710; dt=0.048605 Current time 2017-03-02 28412.187315; dt=0.048605 Current time 2017-03-02 28412.235919; dt=0.048605 Current time 2017-03-02 28412.284524; dt=0.048604 Current time 2017-03-02 28412.333128; dt=0.048604 Current time 2017-03-02 28412.381732; dt=0.048604 Current time 2017-03-02 28412.430337; dt=0.048604 Current time 2017-03-02 28412.478941; dt=0.048604 Current time 2017-03-02 28412.527545; dt=0.048604 Current time 2017-03-02 28412.576149; dt=0.048604 Current time 2017-03-02 28412.624753; dt=0.048604 Current time 2017-03-02 28412.673357; dt=0.048604 Current time 2017-03-02 28412.721961; dt=0.048604 Current time 2017-03-02 28412.770565; dt=0.048604 Current time 2017-03-02 28412.819169; dt=0.048604 Current time 2017-03-02 28412.867773; dt=0.048604 Current time 2017-03-02 28412.916376; dt=0.048604 Current time 2017-03-02 28412.964980; dt=0.048604 Current time 2017-03-02 28413.013584; dt=0.048604 Current time 2017-03-02 28413.062187; dt=0.048604 Current time 2017-03-02 28413.110791; dt=0.048603 Current time 2017-03-02 28413.159394; dt=0.048603 Current time 2017-03-02 28413.207997; dt=0.048603 Current time 2017-03-02 28413.256601; dt=0.048603 Current time 2017-03-02 28413.305204; dt=0.048603 Current time 2017-03-02 28413.353807; dt=0.048603 Current time 2017-03-02 28413.402410; dt=0.048603 Current time 2017-03-02 28413.451013; dt=0.048603 Current time 2017-03-02 28413.499616; dt=0.048603 Current time 2017-03-02 28413.548219; dt=0.048603 Current time 2017-03-02 28413.596822; dt=0.048603 Current time 2017-03-02 28413.645425; dt=0.048603 Current time 2017-03-02 28413.694028; dt=0.048603 Current time 2017-03-02 28413.742631; dt=0.048603 Current time 2017-03-02 28413.791234; dt=0.048603 Current time 2017-03-02 28413.839836; dt=0.048603 Current time 2017-03-02 28413.888439; dt=0.048603 Current time 2017-03-02 28413.937042; dt=0.048603 Current time 2017-03-02 28413.985644; dt=0.048603 Current time 2017-03-02 28414.034247; dt=0.048602 Current time 2017-03-02 28414.082849; dt=0.048602 Current time 2017-03-02 28414.131452; dt=0.048602 Current time 2017-03-02 28414.180054; dt=0.048602 Current time 2017-03-02 28414.228656; dt=0.048602 Current time 2017-03-02 28414.277258; dt=0.048602 Current time 2017-03-02 28414.325861; dt=0.048602 Current time 2017-03-02 28414.374463; dt=0.048602 Current time 2017-03-02 28414.423065; dt=0.048602 Current time 2017-03-02 28414.471667; dt=0.048602 Current time 2017-03-02 28414.520269; dt=0.048602 Current time 2017-03-02 28414.568871; dt=0.048602 Current time 2017-03-02 28414.617473; dt=0.048602 Current time 2017-03-02 28414.666075; dt=0.048602 Current time 2017-03-02 28414.714677; dt=0.048602 Current time 2017-03-02 28414.763278; dt=0.048602 Current time 2017-03-02 28414.811880; dt=0.048602 Current time 2017-03-02 28414.860482; dt=0.048602 Current time 2017-03-02 28414.909083; dt=0.048602 Current time 2017-03-02 28414.957685; dt=0.048602 Current time 2017-03-02 28415.000000; dt=0.042315 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28415.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28420.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28420.000000 Current time 2017-03-02 28415.048641; dt=0.048641 Current time 2017-03-02 28415.097241; dt=0.048600 Current time 2017-03-02 28415.145843; dt=0.048602 Current time 2017-03-02 28415.194444; dt=0.048601 Current time 2017-03-02 28415.243045; dt=0.048601 Current time 2017-03-02 28415.291646; dt=0.048601 Current time 2017-03-02 28415.340248; dt=0.048601 Current time 2017-03-02 28415.388849; dt=0.048601 Current time 2017-03-02 28415.437450; dt=0.048601 Current time 2017-03-02 28415.486051; dt=0.048601 Current time 2017-03-02 28415.534652; dt=0.048601 Current time 2017-03-02 28415.583253; dt=0.048601 Current time 2017-03-02 28415.631854; dt=0.048601 Current time 2017-03-02 28415.680455; dt=0.048601 Current time 2017-03-02 28415.729056; dt=0.048601 Current time 2017-03-02 28415.777657; dt=0.048601 Current time 2017-03-02 28415.826258; dt=0.048601 Current time 2017-03-02 28415.874859; dt=0.048601 Current time 2017-03-02 28415.923460; dt=0.048601 Current time 2017-03-02 28415.972060; dt=0.048601 Current time 2017-03-02 28416.020661; dt=0.048601 Current time 2017-03-02 28416.069262; dt=0.048601 Current time 2017-03-02 28416.117863; dt=0.048601 Current time 2017-03-02 28416.166463; dt=0.048601 Current time 2017-03-02 28416.215064; dt=0.048601 Current time 2017-03-02 28416.263664; dt=0.048601 Current time 2017-03-02 28416.312265; dt=0.048601 Current time 2017-03-02 28416.360865; dt=0.048600 Current time 2017-03-02 28416.409466; dt=0.048600 Current time 2017-03-02 28416.458066; dt=0.048600 Current time 2017-03-02 28416.506666; dt=0.048600 Current time 2017-03-02 28416.555267; dt=0.048600 Current time 2017-03-02 28416.603867; dt=0.048600 Current time 2017-03-02 28416.652467; dt=0.048600 Current time 2017-03-02 28416.701068; dt=0.048600 Current time 2017-03-02 28416.749668; dt=0.048600 Current time 2017-03-02 28416.798268; dt=0.048600 Current time 2017-03-02 28416.846868; dt=0.048600 Current time 2017-03-02 28416.895468; dt=0.048600 Current time 2017-03-02 28416.944068; dt=0.048600 Current time 2017-03-02 28416.992668; dt=0.048600 Current time 2017-03-02 28417.041268; dt=0.048600 Current time 2017-03-02 28417.089868; dt=0.048600 Current time 2017-03-02 28417.138468; dt=0.048600 Current time 2017-03-02 28417.187068; dt=0.048600 Current time 2017-03-02 28417.235667; dt=0.048600 Current time 2017-03-02 28417.284267; dt=0.048600 Current time 2017-03-02 28417.332867; dt=0.048600 Current time 2017-03-02 28417.381467; dt=0.048600 Current time 2017-03-02 28417.430066; dt=0.048600 Current time 2017-03-02 28417.478666; dt=0.048600 Current time 2017-03-02 28417.527266; dt=0.048600 Current time 2017-03-02 28417.575865; dt=0.048600 Current time 2017-03-02 28417.624465; dt=0.048600 Current time 2017-03-02 28417.673064; dt=0.048599 Current time 2017-03-02 28417.721664; dt=0.048599 Current time 2017-03-02 28417.770263; dt=0.048599 Current time 2017-03-02 28417.818862; dt=0.048599 Current time 2017-03-02 28417.867462; dt=0.048599 Current time 2017-03-02 28417.916061; dt=0.048599 Current time 2017-03-02 28417.964660; dt=0.048599 Current time 2017-03-02 28418.013260; dt=0.048599 Current time 2017-03-02 28418.061859; dt=0.048599 Current time 2017-03-02 28418.110458; dt=0.048599 Current time 2017-03-02 28418.159057; dt=0.048599 Current time 2017-03-02 28418.207656; dt=0.048599 Current time 2017-03-02 28418.256255; dt=0.048599 Current time 2017-03-02 28418.304854; dt=0.048599 Current time 2017-03-02 28418.353454; dt=0.048599 Current time 2017-03-02 28418.402052; dt=0.048599 Current time 2017-03-02 28418.450651; dt=0.048599 Current time 2017-03-02 28418.499250; dt=0.048599 Current time 2017-03-02 28418.547849; dt=0.048599 Current time 2017-03-02 28418.596448; dt=0.048599 Current time 2017-03-02 28418.645047; dt=0.048599 Current time 2017-03-02 28418.693646; dt=0.048599 Current time 2017-03-02 28418.742244; dt=0.048599 Current time 2017-03-02 28418.790843; dt=0.048599 Current time 2017-03-02 28418.839442; dt=0.048599 Current time 2017-03-02 28418.888040; dt=0.048599 Current time 2017-03-02 28418.936639; dt=0.048599 Current time 2017-03-02 28418.985238; dt=0.048599 Current time 2017-03-02 28419.033836; dt=0.048599 Current time 2017-03-02 28419.082435; dt=0.048599 Current time 2017-03-02 28419.131033; dt=0.048598 Current time 2017-03-02 28419.179632; dt=0.048598 Current time 2017-03-02 28419.228230; dt=0.048598 Current time 2017-03-02 28419.276828; dt=0.048598 Current time 2017-03-02 28419.325427; dt=0.048598 Current time 2017-03-02 28419.374025; dt=0.048598 Current time 2017-03-02 28419.422623; dt=0.048598 Current time 2017-03-02 28419.471222; dt=0.048598 Current time 2017-03-02 28419.519820; dt=0.048598 Current time 2017-03-02 28419.568418; dt=0.048598 Current time 2017-03-02 28419.617016; dt=0.048598 Current time 2017-03-02 28419.665614; dt=0.048598 Current time 2017-03-02 28419.714212; dt=0.048598 Current time 2017-03-02 28419.762811; dt=0.048598 Current time 2017-03-02 28419.811409; dt=0.048598 Current time 2017-03-02 28419.860007; dt=0.048598 Current time 2017-03-02 28419.908605; dt=0.048598 Current time 2017-03-02 28419.957203; dt=0.048598 Current time 2017-03-02 28420.000000; dt=0.042797 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28420.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28425.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28425.000000 Current time 2017-03-02 28420.048634; dt=0.048634 Current time 2017-03-02 28420.097231; dt=0.048596 Current time 2017-03-02 28420.145829; dt=0.048598 Current time 2017-03-02 28420.194426; dt=0.048598 Current time 2017-03-02 28420.243024; dt=0.048598 Current time 2017-03-02 28420.291622; dt=0.048598 Current time 2017-03-02 28420.340219; dt=0.048598 Current time 2017-03-02 28420.388817; dt=0.048598 Current time 2017-03-02 28420.437415; dt=0.048598 Current time 2017-03-02 28420.486012; dt=0.048598 Current time 2017-03-02 28420.534610; dt=0.048598 Current time 2017-03-02 28420.583207; dt=0.048598 Current time 2017-03-02 28420.631805; dt=0.048598 Current time 2017-03-02 28420.680403; dt=0.048598 Current time 2017-03-02 28420.729000; dt=0.048597 Current time 2017-03-02 28420.777597; dt=0.048597 Current time 2017-03-02 28420.826195; dt=0.048597 Current time 2017-03-02 28420.874792; dt=0.048597 Current time 2017-03-02 28420.923390; dt=0.048597 Current time 2017-03-02 28420.971987; dt=0.048597 Current time 2017-03-02 28421.020584; dt=0.048597 Current time 2017-03-02 28421.069182; dt=0.048597 Current time 2017-03-02 28421.117779; dt=0.048597 Current time 2017-03-02 28421.166376; dt=0.048597 Current time 2017-03-02 28421.214973; dt=0.048597 Current time 2017-03-02 28421.263571; dt=0.048597 Current time 2017-03-02 28421.312168; dt=0.048597 Current time 2017-03-02 28421.360765; dt=0.048597 Current time 2017-03-02 28421.409362; dt=0.048597 Current time 2017-03-02 28421.457959; dt=0.048597 Current time 2017-03-02 28421.506556; dt=0.048597 Current time 2017-03-02 28421.555153; dt=0.048597 Current time 2017-03-02 28421.603750; dt=0.048597 Current time 2017-03-02 28421.652347; dt=0.048597 Current time 2017-03-02 28421.700944; dt=0.048597 Current time 2017-03-02 28421.749541; dt=0.048597 Current time 2017-03-02 28421.798138; dt=0.048597 Current time 2017-03-02 28421.846735; dt=0.048597 Current time 2017-03-02 28421.895332; dt=0.048597 Current time 2017-03-02 28421.943928; dt=0.048597 Current time 2017-03-02 28421.992525; dt=0.048597 Current time 2017-03-02 28422.041122; dt=0.048597 Current time 2017-03-02 28422.089719; dt=0.048597 Current time 2017-03-02 28422.138315; dt=0.048597 Current time 2017-03-02 28422.186912; dt=0.048597 Current time 2017-03-02 28422.235508; dt=0.048597 Current time 2017-03-02 28422.284105; dt=0.048597 Current time 2017-03-02 28422.332702; dt=0.048597 Current time 2017-03-02 28422.381298; dt=0.048597 Current time 2017-03-02 28422.429895; dt=0.048597 Current time 2017-03-02 28422.478491; dt=0.048596 Current time 2017-03-02 28422.527088; dt=0.048596 Current time 2017-03-02 28422.575684; dt=0.048596 Current time 2017-03-02 28422.624280; dt=0.048596 Current time 2017-03-02 28422.672877; dt=0.048596 Current time 2017-03-02 28422.721473; dt=0.048596 Current time 2017-03-02 28422.770069; dt=0.048596 Current time 2017-03-02 28422.818666; dt=0.048596 Current time 2017-03-02 28422.867262; dt=0.048596 Current time 2017-03-02 28422.915858; dt=0.048596 Current time 2017-03-02 28422.964454; dt=0.048596 Current time 2017-03-02 28423.013051; dt=0.048596 Current time 2017-03-02 28423.061647; dt=0.048596 Current time 2017-03-02 28423.110243; dt=0.048596 Current time 2017-03-02 28423.158839; dt=0.048596 Current time 2017-03-02 28423.207435; dt=0.048596 Current time 2017-03-02 28423.256031; dt=0.048596 Current time 2017-03-02 28423.304627; dt=0.048596 Current time 2017-03-02 28423.353223; dt=0.048596 Current time 2017-03-02 28423.401819; dt=0.048596 Current time 2017-03-02 28423.450415; dt=0.048596 Current time 2017-03-02 28423.499011; dt=0.048596 Current time 2017-03-02 28423.547607; dt=0.048596 Current time 2017-03-02 28423.596202; dt=0.048596 Current time 2017-03-02 28423.644798; dt=0.048596 Current time 2017-03-02 28423.693394; dt=0.048596 Current time 2017-03-02 28423.741990; dt=0.048596 Current time 2017-03-02 28423.790585; dt=0.048596 Current time 2017-03-02 28423.839181; dt=0.048596 Current time 2017-03-02 28423.887777; dt=0.048596 Current time 2017-03-02 28423.936372; dt=0.048596 Current time 2017-03-02 28423.984968; dt=0.048596 Current time 2017-03-02 28424.033564; dt=0.048596 Current time 2017-03-02 28424.082159; dt=0.048596 Current time 2017-03-02 28424.130755; dt=0.048596 Current time 2017-03-02 28424.179350; dt=0.048595 Current time 2017-03-02 28424.227946; dt=0.048595 Current time 2017-03-02 28424.276541; dt=0.048595 Current time 2017-03-02 28424.325137; dt=0.048595 Current time 2017-03-02 28424.373732; dt=0.048595 Current time 2017-03-02 28424.422327; dt=0.048595 Current time 2017-03-02 28424.470923; dt=0.048595 Current time 2017-03-02 28424.519518; dt=0.048595 Current time 2017-03-02 28424.568113; dt=0.048595 Current time 2017-03-02 28424.616708; dt=0.048595 Current time 2017-03-02 28424.665304; dt=0.048595 Current time 2017-03-02 28424.713899; dt=0.048595 Current time 2017-03-02 28424.762494; dt=0.048595 Current time 2017-03-02 28424.811089; dt=0.048595 Current time 2017-03-02 28424.859684; dt=0.048595 Current time 2017-03-02 28424.908279; dt=0.048595 Current time 2017-03-02 28424.956874; dt=0.048595 Current time 2017-03-02 28425.000000; dt=0.043126 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28425.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28430.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28430.000000 Current time 2017-03-02 28425.048629; dt=0.048629 Current time 2017-03-02 28425.097223; dt=0.048593 Current time 2017-03-02 28425.145818; dt=0.048595 Current time 2017-03-02 28425.194413; dt=0.048595 Current time 2017-03-02 28425.243007; dt=0.048595 Current time 2017-03-02 28425.291602; dt=0.048595 Current time 2017-03-02 28425.340197; dt=0.048595 Current time 2017-03-02 28425.388792; dt=0.048595 Current time 2017-03-02 28425.437387; dt=0.048595 Current time 2017-03-02 28425.485981; dt=0.048595 Current time 2017-03-02 28425.534576; dt=0.048595 Current time 2017-03-02 28425.583171; dt=0.048595 Current time 2017-03-02 28425.631765; dt=0.048595 Current time 2017-03-02 28425.680360; dt=0.048595 Current time 2017-03-02 28425.728954; dt=0.048595 Current time 2017-03-02 28425.777549; dt=0.048595 Current time 2017-03-02 28425.826144; dt=0.048595 Current time 2017-03-02 28425.874738; dt=0.048595 Current time 2017-03-02 28425.923333; dt=0.048594 Current time 2017-03-02 28425.971927; dt=0.048594 Current time 2017-03-02 28426.020521; dt=0.048594 Current time 2017-03-02 28426.069116; dt=0.048594 Current time 2017-03-02 28426.117710; dt=0.048594 Current time 2017-03-02 28426.166305; dt=0.048594 Current time 2017-03-02 28426.214899; dt=0.048594 Current time 2017-03-02 28426.263493; dt=0.048594 Current time 2017-03-02 28426.312087; dt=0.048594 Current time 2017-03-02 28426.360682; dt=0.048594 Current time 2017-03-02 28426.409276; dt=0.048594 Current time 2017-03-02 28426.457870; dt=0.048594 Current time 2017-03-02 28426.506464; dt=0.048594 Current time 2017-03-02 28426.555058; dt=0.048594 Current time 2017-03-02 28426.603652; dt=0.048594 Current time 2017-03-02 28426.652247; dt=0.048594 Current time 2017-03-02 28426.700841; dt=0.048594 Current time 2017-03-02 28426.749435; dt=0.048594 Current time 2017-03-02 28426.798029; dt=0.048594 Current time 2017-03-02 28426.846623; dt=0.048594 Current time 2017-03-02 28426.895216; dt=0.048594 Current time 2017-03-02 28426.943810; dt=0.048594 Current time 2017-03-02 28426.992404; dt=0.048594 Current time 2017-03-02 28427.040998; dt=0.048594 Current time 2017-03-02 28427.089592; dt=0.048594 Current time 2017-03-02 28427.138186; dt=0.048594 Current time 2017-03-02 28427.186779; dt=0.048594 Current time 2017-03-02 28427.235373; dt=0.048594 Current time 2017-03-02 28427.283967; dt=0.048594 Current time 2017-03-02 28427.332560; dt=0.048594 Current time 2017-03-02 28427.381154; dt=0.048594 Current time 2017-03-02 28427.429748; dt=0.048594 Current time 2017-03-02 28427.478341; dt=0.048594 Current time 2017-03-02 28427.526935; dt=0.048594 Current time 2017-03-02 28427.575528; dt=0.048594 Current time 2017-03-02 28427.624122; dt=0.048593 Current time 2017-03-02 28427.672715; dt=0.048593 Current time 2017-03-02 28427.721309; dt=0.048593 Current time 2017-03-02 28427.769902; dt=0.048593 Current time 2017-03-02 28427.818496; dt=0.048593 Current time 2017-03-02 28427.867089; dt=0.048593 Current time 2017-03-02 28427.915682; dt=0.048593 Current time 2017-03-02 28427.964276; dt=0.048593 Current time 2017-03-02 28428.012869; dt=0.048593 Current time 2017-03-02 28428.061462; dt=0.048593 Current time 2017-03-02 28428.110055; dt=0.048593 Current time 2017-03-02 28428.158648; dt=0.048593 Current time 2017-03-02 28428.207242; dt=0.048593 Current time 2017-03-02 28428.255835; dt=0.048593 Current time 2017-03-02 28428.304428; dt=0.048593 Current time 2017-03-02 28428.353021; dt=0.048593 Current time 2017-03-02 28428.401614; dt=0.048593 Current time 2017-03-02 28428.450207; dt=0.048593 Current time 2017-03-02 28428.498800; dt=0.048593 Current time 2017-03-02 28428.547393; dt=0.048593 Current time 2017-03-02 28428.595986; dt=0.048593 Current time 2017-03-02 28428.644579; dt=0.048593 Current time 2017-03-02 28428.693171; dt=0.048593 Current time 2017-03-02 28428.741764; dt=0.048593 Current time 2017-03-02 28428.790357; dt=0.048593 Current time 2017-03-02 28428.838950; dt=0.048593 Current time 2017-03-02 28428.887543; dt=0.048593 Current time 2017-03-02 28428.936135; dt=0.048593 Current time 2017-03-02 28428.984728; dt=0.048593 Current time 2017-03-02 28429.033321; dt=0.048593 Current time 2017-03-02 28429.081913; dt=0.048593 Current time 2017-03-02 28429.130506; dt=0.048593 Current time 2017-03-02 28429.179098; dt=0.048593 Current time 2017-03-02 28429.227691; dt=0.048593 Current time 2017-03-02 28429.276284; dt=0.048593 Current time 2017-03-02 28429.324876; dt=0.048592 Current time 2017-03-02 28429.373468; dt=0.048592 Current time 2017-03-02 28429.422061; dt=0.048592 Current time 2017-03-02 28429.470653; dt=0.048592 Current time 2017-03-02 28429.519246; dt=0.048592 Current time 2017-03-02 28429.567838; dt=0.048592 Current time 2017-03-02 28429.616430; dt=0.048592 Current time 2017-03-02 28429.665023; dt=0.048592 Current time 2017-03-02 28429.713615; dt=0.048592 Current time 2017-03-02 28429.762207; dt=0.048592 Current time 2017-03-02 28429.810799; dt=0.048592 Current time 2017-03-02 28429.859392; dt=0.048592 Current time 2017-03-02 28429.907984; dt=0.048592 Current time 2017-03-02 28429.956576; dt=0.048592 Current time 2017-03-02 28430.000000; dt=0.043424 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28430.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28435.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28435.000000 Current time 2017-03-02 28430.048624; dt=0.048624 Current time 2017-03-02 28430.097215; dt=0.048591 Current time 2017-03-02 28430.145807; dt=0.048592 Current time 2017-03-02 28430.194399; dt=0.048592 Current time 2017-03-02 28430.242991; dt=0.048592 Current time 2017-03-02 28430.291583; dt=0.048592 Current time 2017-03-02 28430.340175; dt=0.048592 Current time 2017-03-02 28430.388767; dt=0.048592 Current time 2017-03-02 28430.437359; dt=0.048592 Current time 2017-03-02 28430.485950; dt=0.048592 Current time 2017-03-02 28430.534542; dt=0.048592 Current time 2017-03-02 28430.583134; dt=0.048592 Current time 2017-03-02 28430.631726; dt=0.048592 Current time 2017-03-02 28430.680317; dt=0.048592 Current time 2017-03-02 28430.728909; dt=0.048592 Current time 2017-03-02 28430.777501; dt=0.048592 Current time 2017-03-02 28430.826093; dt=0.048592 Current time 2017-03-02 28430.874684; dt=0.048592 Current time 2017-03-02 28430.923276; dt=0.048592 Current time 2017-03-02 28430.971867; dt=0.048592 Current time 2017-03-02 28431.020459; dt=0.048592 Current time 2017-03-02 28431.069051; dt=0.048592 Current time 2017-03-02 28431.117642; dt=0.048592 Current time 2017-03-02 28431.166234; dt=0.048592 Current time 2017-03-02 28431.214825; dt=0.048591 Current time 2017-03-02 28431.263416; dt=0.048591 Current time 2017-03-02 28431.312008; dt=0.048591 Current time 2017-03-02 28431.360599; dt=0.048591 Current time 2017-03-02 28431.409191; dt=0.048591 Current time 2017-03-02 28431.457782; dt=0.048591 Current time 2017-03-02 28431.506373; dt=0.048591 Current time 2017-03-02 28431.554965; dt=0.048591 Current time 2017-03-02 28431.603556; dt=0.048591 Current time 2017-03-02 28431.652147; dt=0.048591 Current time 2017-03-02 28431.700738; dt=0.048591 Current time 2017-03-02 28431.749330; dt=0.048591 Current time 2017-03-02 28431.797921; dt=0.048591 Current time 2017-03-02 28431.846512; dt=0.048591 Current time 2017-03-02 28431.895103; dt=0.048591 Current time 2017-03-02 28431.943694; dt=0.048591 Current time 2017-03-02 28431.992285; dt=0.048591 Current time 2017-03-02 28432.040876; dt=0.048591 Current time 2017-03-02 28432.089467; dt=0.048591 Current time 2017-03-02 28432.138058; dt=0.048591 Current time 2017-03-02 28432.186649; dt=0.048591 Current time 2017-03-02 28432.235240; dt=0.048591 Current time 2017-03-02 28432.283831; dt=0.048591 Current time 2017-03-02 28432.332422; dt=0.048591 Current time 2017-03-02 28432.381013; dt=0.048591 Current time 2017-03-02 28432.429604; dt=0.048591 Current time 2017-03-02 28432.478194; dt=0.048591 Current time 2017-03-02 28432.526785; dt=0.048591 Current time 2017-03-02 28432.575376; dt=0.048591 Current time 2017-03-02 28432.623967; dt=0.048591 Current time 2017-03-02 28432.672557; dt=0.048591 Current time 2017-03-02 28432.721148; dt=0.048591 Current time 2017-03-02 28432.769739; dt=0.048591 Current time 2017-03-02 28432.818329; dt=0.048591 Current time 2017-03-02 28432.866920; dt=0.048591 Current time 2017-03-02 28432.915511; dt=0.048591 Current time 2017-03-02 28432.964101; dt=0.048591 Current time 2017-03-02 28433.012692; dt=0.048591 Current time 2017-03-02 28433.061282; dt=0.048591 Current time 2017-03-02 28433.109873; dt=0.048590 Current time 2017-03-02 28433.158463; dt=0.048590 Current time 2017-03-02 28433.207054; dt=0.048590 Current time 2017-03-02 28433.255644; dt=0.048590 Current time 2017-03-02 28433.304234; dt=0.048590 Current time 2017-03-02 28433.352825; dt=0.048590 Current time 2017-03-02 28433.401415; dt=0.048590 Current time 2017-03-02 28433.450005; dt=0.048590 Current time 2017-03-02 28433.498596; dt=0.048590 Current time 2017-03-02 28433.547186; dt=0.048590 Current time 2017-03-02 28433.595776; dt=0.048590 Current time 2017-03-02 28433.644366; dt=0.048590 Current time 2017-03-02 28433.692956; dt=0.048590 Current time 2017-03-02 28433.741547; dt=0.048590 Current time 2017-03-02 28433.790137; dt=0.048590 Current time 2017-03-02 28433.838727; dt=0.048590 Current time 2017-03-02 28433.887317; dt=0.048590 Current time 2017-03-02 28433.935907; dt=0.048590 Current time 2017-03-02 28433.984497; dt=0.048590 Current time 2017-03-02 28434.033087; dt=0.048590 Current time 2017-03-02 28434.081677; dt=0.048590 Current time 2017-03-02 28434.130267; dt=0.048590 Current time 2017-03-02 28434.178857; dt=0.048590 Current time 2017-03-02 28434.227447; dt=0.048590 Current time 2017-03-02 28434.276037; dt=0.048590 Current time 2017-03-02 28434.324626; dt=0.048590 Current time 2017-03-02 28434.373216; dt=0.048590 Current time 2017-03-02 28434.421806; dt=0.048590 Current time 2017-03-02 28434.470396; dt=0.048590 Current time 2017-03-02 28434.518986; dt=0.048590 Current time 2017-03-02 28434.567575; dt=0.048590 Current time 2017-03-02 28434.616165; dt=0.048590 Current time 2017-03-02 28434.664755; dt=0.048590 Current time 2017-03-02 28434.713344; dt=0.048590 Current time 2017-03-02 28434.761934; dt=0.048590 Current time 2017-03-02 28434.810524; dt=0.048590 Current time 2017-03-02 28434.859113; dt=0.048590 Current time 2017-03-02 28434.907703; dt=0.048590 Current time 2017-03-02 28434.956292; dt=0.048590 Current time 2017-03-02 28435.000000; dt=0.043708 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28435.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28440.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28440.000000 Current time 2017-03-02 28435.048620; dt=0.048620 Current time 2017-03-02 28435.097208; dt=0.048588 Current time 2017-03-02 28435.145798; dt=0.048590 Current time 2017-03-02 28435.194387; dt=0.048589 Current time 2017-03-02 28435.242976; dt=0.048589 Current time 2017-03-02 28435.291566; dt=0.048589 Current time 2017-03-02 28435.340155; dt=0.048589 Current time 2017-03-02 28435.388744; dt=0.048589 Current time 2017-03-02 28435.437334; dt=0.048589 Current time 2017-03-02 28435.485923; dt=0.048589 Current time 2017-03-02 28435.534512; dt=0.048589 Current time 2017-03-02 28435.583101; dt=0.048589 Current time 2017-03-02 28435.631690; dt=0.048589 Current time 2017-03-02 28435.680280; dt=0.048589 Current time 2017-03-02 28435.728869; dt=0.048589 Current time 2017-03-02 28435.777458; dt=0.048589 Current time 2017-03-02 28435.826047; dt=0.048589 Current time 2017-03-02 28435.874636; dt=0.048589 Current time 2017-03-02 28435.923225; dt=0.048589 Current time 2017-03-02 28435.971814; dt=0.048589 Current time 2017-03-02 28436.020403; dt=0.048589 Current time 2017-03-02 28436.068992; dt=0.048589 Current time 2017-03-02 28436.117581; dt=0.048589 Current time 2017-03-02 28436.166170; dt=0.048589 Current time 2017-03-02 28436.214759; dt=0.048589 Current time 2017-03-02 28436.263348; dt=0.048589 Current time 2017-03-02 28436.311937; dt=0.048589 Current time 2017-03-02 28436.360526; dt=0.048589 Current time 2017-03-02 28436.409115; dt=0.048589 Current time 2017-03-02 28436.457704; dt=0.048589 Current time 2017-03-02 28436.506293; dt=0.048589 Current time 2017-03-02 28436.554882; dt=0.048589 Current time 2017-03-02 28436.603470; dt=0.048589 Current time 2017-03-02 28436.652059; dt=0.048589 Current time 2017-03-02 28436.700648; dt=0.048589 Current time 2017-03-02 28436.749237; dt=0.048589 Current time 2017-03-02 28436.797825; dt=0.048589 Current time 2017-03-02 28436.846414; dt=0.048589 Current time 2017-03-02 28436.895003; dt=0.048589 Current time 2017-03-02 28436.943591; dt=0.048589 Current time 2017-03-02 28436.992180; dt=0.048589 Current time 2017-03-02 28437.040768; dt=0.048589 Current time 2017-03-02 28437.089357; dt=0.048589 Current time 2017-03-02 28437.137946; dt=0.048589 Current time 2017-03-02 28437.186534; dt=0.048589 Current time 2017-03-02 28437.235123; dt=0.048589 Current time 2017-03-02 28437.283711; dt=0.048588 Current time 2017-03-02 28437.332300; dt=0.048588 Current time 2017-03-02 28437.380888; dt=0.048588 Current time 2017-03-02 28437.429476; dt=0.048588 Current time 2017-03-02 28437.478065; dt=0.048588 Current time 2017-03-02 28437.526653; dt=0.048588 Current time 2017-03-02 28437.575241; dt=0.048588 Current time 2017-03-02 28437.623830; dt=0.048588 Current time 2017-03-02 28437.672418; dt=0.048588 Current time 2017-03-02 28437.721006; dt=0.048588 Current time 2017-03-02 28437.769595; dt=0.048588 Current time 2017-03-02 28437.818183; dt=0.048588 Current time 2017-03-02 28437.866771; dt=0.048588 Current time 2017-03-02 28437.915359; dt=0.048588 Current time 2017-03-02 28437.963947; dt=0.048588 Current time 2017-03-02 28438.012536; dt=0.048588 Current time 2017-03-02 28438.061124; dt=0.048588 Current time 2017-03-02 28438.109712; dt=0.048588 Current time 2017-03-02 28438.158300; dt=0.048588 Current time 2017-03-02 28438.206888; dt=0.048588 Current time 2017-03-02 28438.255476; dt=0.048588 Current time 2017-03-02 28438.304064; dt=0.048588 Current time 2017-03-02 28438.352652; dt=0.048588 Current time 2017-03-02 28438.401240; dt=0.048588 Current time 2017-03-02 28438.449828; dt=0.048588 Current time 2017-03-02 28438.498416; dt=0.048588 Current time 2017-03-02 28438.547004; dt=0.048588 Current time 2017-03-02 28438.595592; dt=0.048588 Current time 2017-03-02 28438.644179; dt=0.048588 Current time 2017-03-02 28438.692767; dt=0.048588 Current time 2017-03-02 28438.741355; dt=0.048588 Current time 2017-03-02 28438.789943; dt=0.048588 Current time 2017-03-02 28438.838531; dt=0.048588 Current time 2017-03-02 28438.887118; dt=0.048588 Current time 2017-03-02 28438.935706; dt=0.048588 Current time 2017-03-02 28438.984294; dt=0.048588 Current time 2017-03-02 28439.032882; dt=0.048588 Current time 2017-03-02 28439.081469; dt=0.048588 Current time 2017-03-02 28439.130057; dt=0.048588 Current time 2017-03-02 28439.178644; dt=0.048588 Current time 2017-03-02 28439.227232; dt=0.048588 Current time 2017-03-02 28439.275820; dt=0.048588 Current time 2017-03-02 28439.324407; dt=0.048588 Current time 2017-03-02 28439.372995; dt=0.048588 Current time 2017-03-02 28439.421582; dt=0.048588 Current time 2017-03-02 28439.470170; dt=0.048587 Current time 2017-03-02 28439.518757; dt=0.048587 Current time 2017-03-02 28439.567345; dt=0.048587 Current time 2017-03-02 28439.615932; dt=0.048587 Current time 2017-03-02 28439.664520; dt=0.048587 Current time 2017-03-02 28439.713107; dt=0.048587 Current time 2017-03-02 28439.761694; dt=0.048587 Current time 2017-03-02 28439.810282; dt=0.048587 Current time 2017-03-02 28439.858869; dt=0.048587 Current time 2017-03-02 28439.907456; dt=0.048587 Current time 2017-03-02 28439.956044; dt=0.048587 Current time 2017-03-02 28440.000000; dt=0.043956 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28440.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28445.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28445.000000 Current time 2017-03-02 28440.048616; dt=0.048616 Current time 2017-03-02 28440.097202; dt=0.048586 Current time 2017-03-02 28440.145789; dt=0.048587 Current time 2017-03-02 28440.194376; dt=0.048587 Current time 2017-03-02 28440.242964; dt=0.048587 Current time 2017-03-02 28440.291551; dt=0.048587 Current time 2017-03-02 28440.340138; dt=0.048587 Current time 2017-03-02 28440.388725; dt=0.048587 Current time 2017-03-02 28440.437312; dt=0.048587 Current time 2017-03-02 28440.485899; dt=0.048587 Current time 2017-03-02 28440.534486; dt=0.048587 Current time 2017-03-02 28440.583073; dt=0.048587 Current time 2017-03-02 28440.631660; dt=0.048587 Current time 2017-03-02 28440.680247; dt=0.048587 Current time 2017-03-02 28440.728834; dt=0.048587 Current time 2017-03-02 28440.777421; dt=0.048587 Current time 2017-03-02 28440.826008; dt=0.048587 Current time 2017-03-02 28440.874595; dt=0.048587 Current time 2017-03-02 28440.923182; dt=0.048587 Current time 2017-03-02 28440.971769; dt=0.048587 Current time 2017-03-02 28441.020356; dt=0.048587 Current time 2017-03-02 28441.068943; dt=0.048587 Current time 2017-03-02 28441.117529; dt=0.048587 Current time 2017-03-02 28441.166116; dt=0.048587 Current time 2017-03-02 28441.214703; dt=0.048587 Current time 2017-03-02 28441.263290; dt=0.048587 Current time 2017-03-02 28441.311877; dt=0.048587 Current time 2017-03-02 28441.360463; dt=0.048587 Current time 2017-03-02 28441.409050; dt=0.048587 Current time 2017-03-02 28441.457637; dt=0.048587 Current time 2017-03-02 28441.506223; dt=0.048587 Current time 2017-03-02 28441.554810; dt=0.048587 Current time 2017-03-02 28441.603397; dt=0.048587 Current time 2017-03-02 28441.651983; dt=0.048587 Current time 2017-03-02 28441.700570; dt=0.048587 Current time 2017-03-02 28441.749157; dt=0.048587 Current time 2017-03-02 28441.797743; dt=0.048587 Current time 2017-03-02 28441.846330; dt=0.048587 Current time 2017-03-02 28441.894916; dt=0.048587 Current time 2017-03-02 28441.943503; dt=0.048587 Current time 2017-03-02 28441.992089; dt=0.048587 Current time 2017-03-02 28442.040676; dt=0.048586 Current time 2017-03-02 28442.089262; dt=0.048586 Current time 2017-03-02 28442.137849; dt=0.048586 Current time 2017-03-02 28442.186435; dt=0.048586 Current time 2017-03-02 28442.235022; dt=0.048586 Current time 2017-03-02 28442.283608; dt=0.048586 Current time 2017-03-02 28442.332195; dt=0.048586 Current time 2017-03-02 28442.380781; dt=0.048586 Current time 2017-03-02 28442.429367; dt=0.048586 Current time 2017-03-02 28442.477954; dt=0.048586 Current time 2017-03-02 28442.526540; dt=0.048586 Current time 2017-03-02 28442.575126; dt=0.048586 Current time 2017-03-02 28442.623713; dt=0.048586 Current time 2017-03-02 28442.672299; dt=0.048586 Current time 2017-03-02 28442.720885; dt=0.048586 Current time 2017-03-02 28442.769471; dt=0.048586 Current time 2017-03-02 28442.818057; dt=0.048586 Current time 2017-03-02 28442.866644; dt=0.048586 Current time 2017-03-02 28442.915230; dt=0.048586 Current time 2017-03-02 28442.963816; dt=0.048586 Current time 2017-03-02 28443.012402; dt=0.048586 Current time 2017-03-02 28443.060988; dt=0.048586 Current time 2017-03-02 28443.109574; dt=0.048586 Current time 2017-03-02 28443.158160; dt=0.048586 Current time 2017-03-02 28443.206746; dt=0.048586 Current time 2017-03-02 28443.255332; dt=0.048586 Current time 2017-03-02 28443.303918; dt=0.048586 Current time 2017-03-02 28443.352504; dt=0.048586 Current time 2017-03-02 28443.401090; dt=0.048586 Current time 2017-03-02 28443.449676; dt=0.048586 Current time 2017-03-02 28443.498262; dt=0.048586 Current time 2017-03-02 28443.546848; dt=0.048586 Current time 2017-03-02 28443.595434; dt=0.048586 Current time 2017-03-02 28443.644020; dt=0.048586 Current time 2017-03-02 28443.692606; dt=0.048586 Current time 2017-03-02 28443.741192; dt=0.048586 Current time 2017-03-02 28443.789777; dt=0.048586 Current time 2017-03-02 28443.838363; dt=0.048586 Current time 2017-03-02 28443.886949; dt=0.048586 Current time 2017-03-02 28443.935535; dt=0.048586 Current time 2017-03-02 28443.984120; dt=0.048586 Current time 2017-03-02 28444.032706; dt=0.048586 Current time 2017-03-02 28444.081292; dt=0.048586 Current time 2017-03-02 28444.129878; dt=0.048586 Current time 2017-03-02 28444.178463; dt=0.048586 Current time 2017-03-02 28444.227049; dt=0.048586 Current time 2017-03-02 28444.275635; dt=0.048586 Current time 2017-03-02 28444.324220; dt=0.048586 Current time 2017-03-02 28444.372806; dt=0.048586 Current time 2017-03-02 28444.421391; dt=0.048586 Current time 2017-03-02 28444.469977; dt=0.048586 Current time 2017-03-02 28444.518562; dt=0.048586 Current time 2017-03-02 28444.567148; dt=0.048586 Current time 2017-03-02 28444.615733; dt=0.048585 Current time 2017-03-02 28444.664319; dt=0.048585 Current time 2017-03-02 28444.712904; dt=0.048585 Current time 2017-03-02 28444.761490; dt=0.048585 Current time 2017-03-02 28444.810075; dt=0.048585 Current time 2017-03-02 28444.858661; dt=0.048585 Current time 2017-03-02 28444.907246; dt=0.048585 Current time 2017-03-02 28444.955831; dt=0.048585 Current time 2017-03-02 28445.000000; dt=0.044169 System sizes according to Phiall: 212 128 512 HDF5 Output file name: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/20170302_28445.000000.h5 INFO: Input file has selected full output or milestones, large files may result! Writing topside boundary conditions for non-inverted-type grid... date and time: 2017 3 2 28450.000000000000 efield filename: /dartfs-hpc/rc/lab/L/LynchK/public_html/Gemini3D/isinglass_78/inputs/fields/20170302_28450.000000 Current time 2017-03-02 28445.048613; dt=0.048613 Current time 2017-03-02 28445.097197; dt=0.048584 Current time 2017-03-02 28445.145782; dt=0.048585 Current time 2017-03-02 28445.194367; dt=0.048585 Current time 2017-03-02 28445.242953; dt=0.048585 Current time 2017-03-02 28445.291538; dt=0.048585 Current time 2017-03-02 28445.340123; dt=0.048585 Current time 2017-03-02 28445.388708; dt=0.048585 Current time 2017-03-02 28445.437293; dt=0.048585 Current time 2017-03-02 28445.485879; dt=0.048585 Current time 2017-03-02 28445.534464; dt=0.048585 Current time 2017-03-02 28445.583049; dt=0.048585 Current time 2017-03-02 28445.631634; dt=0.048585 Current time 2017-03-02 28445.680219; dt=0.048585 Current time 2017-03-02 28445.728804; dt=0.048585 Current time 2017-03-02 28445.777389; dt=0.048585 Current time 2017-03-02 28445.825974; dt=0.048585 Current time 2017-03-02 28445.874559; dt=0.048585 Current time 2017-03-02 28445.923144; dt=0.048585 Current time 2017-03-02 28445.971729; dt=0.048585 Current time 2017-03-02 28446.020314; dt=0.048585 Current time 2017-03-02 28446.068899; dt=0.048585 Current time 2017-03-02 28446.117484; dt=0.048585 Current time 2017-03-02 28446.166069; dt=0.048585 Current time 2017-03-02 28446.214654; dt=0.048585 Current time 2017-03-02 28446.263239; dt=0.048585 Current time 2017-03-02 28446.311824; dt=0.048585 Current time 2017-03-02 28446.360409; dt=0.048585 Current time 2017-03-02 28446.408994; dt=0.048585 Current time 2017-03-02 28446.457579; dt=0.048585 Current time 2017-03-02 28446.506164; dt=0.048585 Current time 2017-03-02 28446.554748; dt=0.048585 Current time 2017-03-02 28446.603333; dt=0.048585 Current time 2017-03-02 28446.651918; dt=0.048585 Current time 2017-03-02 28446.700503; dt=0.048585 Current time 2017-03-02 28446.749088; dt=0.048585 Current time 2017-03-02 28446.797672; dt=0.048585 Current time 2017-03-02 28446.846257; dt=0.048585 Current time 2017-03-02 28446.894842; dt=0.048585 Current time 2017-03-02 28446.943427; dt=0.048585 Current time 2017-03-02 28446.992011; dt=0.048585 Current time 2017-03-02 28447.040596; dt=0.048585 Current time 2017-03-02 28447.089181; dt=0.048585 Current time 2017-03-02 28447.137765; dt=0.048585 Current time 2017-03-02 28447.186350; dt=0.048585 Current time 2017-03-02 28447.234934; dt=0.048585 Current time 2017-03-02 28447.283519; dt=0.048585 Current time 2017-03-02 28447.332104; dt=0.048585 Current time 2017-03-02 28447.380688; dt=0.048585 Current time 2017-03-02 28447.429273; dt=0.048585 Current time 2017-03-02 28447.477857; dt=0.048585 Current time 2017-03-02 28447.526442; dt=0.048585 Current time 2017-03-02 28447.575026; dt=0.048584 Current time 2017-03-02 28447.623611; dt=0.048584 Current time 2017-03-02 28447.672195; dt=0.048584 Current time 2017-03-02 28447.720780; dt=0.048584 Current time 2017-03-02 28447.769364; dt=0.048584 Current time 2017-03-02 28447.817948; dt=0.048584 Current time 2017-03-02 28447.866533; dt=0.048584 Current time 2017-03-02 28447.915117; dt=0.048584 Current time 2017-03-02 28447.963701; dt=0.048584 Current time 2017-03-02 28448.012286; dt=0.048584 Current time 2017-03-02 28448.060870; dt=0.048584 Current time 2017-03-02 28448.109454; dt=0.048584 Current time 2017-03-02 28448.158039; dt=0.048584 Current time 2017-03-02 28448.206623; dt=0.048584 Current time 2017-03-02 28448.255207; dt=0.048584 Current time 2017-03-02 28448.303792; dt=0.048584 Current time 2017-03-02 28448.352376; dt=0.048584 Current time 2017-03-02 28448.400960; dt=0.048584 Current time 2017-03-02 28448.449544; dt=0.048584 Current time 2017-03-02 28448.498128; dt=0.048584 Current time 2017-03-02 28448.546713; dt=0.048584 Current time 2017-03-02 28448.595297; dt=0.048584 Current time 2017-03-02 28448.643881; dt=0.048584 Current time 2017-03-02 28448.692465; dt=0.048584 Current time 2017-03-02 28448.741049; dt=0.048584 Current time 2017-03-02 28448.789633; dt=0.048584 Current time 2017-03-02 28448.838217; dt=0.048584 Current time 2017-03-02 28448.886801; dt=0.048584 Current time 2017-03-02 28448.935385; dt=0.048584 Current time 2017-03-02 28448.983969; dt=0.048584 Current time 2017-03-02 28449.032553; dt=0.048584 Current time 2017-03-02 28449.081137; dt=0.048584 Current time 2017-03-02 28449.129721; dt=0.048584 Current time 2017-03-02 28449.178305; dt=0.048584 Current time 2017-03-02 28449.226889; dt=0.048584 Current time 2017-03-02 28449.275473; dt=0.048584 Current time 2017-03-02 28449.324057; dt=0.048584 Current time 2017-03-02 28449.372641; dt=0.048584 Current time 2017-03-02 28449.421225; dt=0.048584