PLINK v1.90b6.24 64-bit (6 Jun 2021)
Options in effect:
  --bfile /Users/haekyungim/Library/CloudStorage/Box-Box/LargeFiles/imlab-data/Reference-Data/HapMap/hapmap3_ch22
  --out /Users/haekyungim/Library/CloudStorage/Box-Box/LargeFiles/imlab-data/Reference-Data/HapMap/tempo/pca
  --pca

Hostname: MBP-HKI-14-2021.local
Working directory: /Users/haekyungim/Github/web-HGEN-471/content/post/2022-02-03-homework-4-population-structure-solution
Start time: Thu Feb  3 22:38:45 2022

Random number seed: 1643949525
16384 MB RAM detected; reserving 8192 MB for main workspace.
20649 variants loaded from .bim file.
1397 people (683 males, 714 females) loaded from .fam.
Using up to 8 threads (change this with --threads).
Before main variant filters, 1198 founders and 199 nonfounders present.
Calculating allele frequencies... done.
Total genotyping rate is 0.997523.
20649 variants and 1397 people pass filters and QC.
Note: No phenotypes present.
Relationship matrix calculation complete.
--pca: Results saved to
/Users/haekyungim/Library/CloudStorage/Box-Box/LargeFiles/imlab-data/Reference-Data/HapMap/tempo/pca.eigenval
and
/Users/haekyungim/Library/CloudStorage/Box-Box/LargeFiles/imlab-data/Reference-Data/HapMap/tempo/pca.eigenvec
.

End time: Thu Feb  3 22:38:46 2022