analysis:matlab-overview
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analysis:matlab-overview [2017/06/30 20:33] mvdm created |
analysis:matlab-overview [2017/06/30 21:52] mvdm [Visualization functions] |
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| - | ===== Overview of common functions ===== | + | ====== Overview of common functions ====== |
| - | ==== Utility functions ==== | + | ===== Utility functions ===== |
| - | === Utility functions common to multiple data types === | + | ==== Utility functions common to multiple data types ==== |
| - | * restrict() | + | * restrict(): restricts times in data object (iv, ts, tsd) to specific intervals |
| - | === Functions associated with specific data types === | + | ==== Utility functions associated with specific data types ==== |
| - | == interval (iv) == | + | === interval (iv) === |
| Basics: | Basics: | ||
| * iv(): constructor | * iv(): constructor | ||
| - | * CheckIV(): check if IV is correctly formatted | + | * CheckIV(): check integrity of iv struct |
| + | * SelectIV(): specify intervals to keep | ||
| Simple operations: | Simple operations: | ||
| Line 21: | Line 22: | ||
| * InvertIV(): "flips" included intervals to non-included, and vice versa | * InvertIV(): "flips" included intervals to non-included, and vice versa | ||
| * MergeIV(): merge touching, overlapping, or nearby intervals within an iv struct | * MergeIV(): merge touching, overlapping, or nearby intervals within an iv struct | ||
| - | * SelectIV(): specify intervals to keep | ||
| Set operations: | Set operations: | ||
| Line 32: | Line 32: | ||
| * TSDtoIV(): create interval data from tsd by tresholding | * TSDtoIV(): create interval data from tsd by tresholding | ||
| + | * MultiRaster(): see below | ||
| Visualization: | Visualization: | ||
| Line 37: | Line 38: | ||
| * PlotTSDfromIV(): display intervals defined relative to tsd | * PlotTSDfromIV(): display intervals defined relative to tsd | ||
| - | == timestamps (ts) == | + | === timestamps (ts) === |
| + | |||
| + | [[https://github.com/vandermeerlab/vandermeerlab/tree/master/code-matlab/shared/datatypes/ts|ts folder on GitHub]] | ||
| + | |||
| + | Basics: | ||
| + | |||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/ts/ts.m|ts()]] constructor | ||
| + | * CheckTS(): check integrity of ts struct | ||
| + | * SelectTS(): specify ts data to keep. (Also performs reordering) | ||
| + | * concatenateTS(): concatenate two ts objects | ||
| + | |||
| + | Analysis operations: | ||
| + | |||
| + | * getSpikeCount(): returns spike counts (number of spikes) in a nCells x 1 vector of ts input | ||
| + | * ShuffleTS(): shuffle spikes in ts struct | ||
| + | |||
| + | Visualization: | ||
| + | |||
| + | * MultiRaster(): see below | ||
| + | |||
| + | === timestamped data (tsd) === | ||
| + | |||
| + | [[https://github.com/vandermeerlab/vandermeerlab/tree/master/code-matlab/shared/datatypes/tsd|tsd folder on GitHub]] | ||
| + | |||
| + | Basics and selection: | ||
| + | |||
| + | * tsd(): constructor | ||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/CheckTSD.m|CheckTSD()]]: check integrity of tsd struct | ||
| + | * getd(): get (raw) data with specified label | ||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/TSD_SelectChannel.m|TSD_SelectChannel()]]: returns tsd containing only channels with labels in channel_label | ||
| + | |||
| + | Merging: | ||
| + | |||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/MergeTSD.m|MergeTSD()]]: Merge data from multiple TSDs into a single, new TSD | ||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/UnionTSD.m|UnionTSD()]]: returns the union (merge) of two TSD inputs | ||
| + | |||
| + | Analysis: | ||
| + | |||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/TSD_getidx2.m|TSD_getidx2()]]: returns idxs into ts or tsd, delimited by input interval(s) | ||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/TSDbyZ.m | TSDbyZ()]]: compute averages of the values in tsd_in binned by z's cfg.edge | ||
| + | * [[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/shared/datatypes/tsd/TSDbySpace.m |TSDbySpace()]]: construct 2D matrix with spatial averages of the values in tsd_in | ||
| + | |||
| + | === tuning curve (tc) === | ||
| - | == timestamped data (tsd) == | + | ==== Low-level utility functions ==== |
| - | == tuning curve (tc) == | + | * nearest_idx3(): |
| - | ==== Visualization functions ==== | + | ===== Visualization functions ===== |
| - | ==== Loading functions ==== | + | * the amazing MultiRaster ([[https://github.com/vandermeerlab/vandermeerlab/blob/master/code-matlab/example_workflows/MultiRaster_usage.m|examples]]) |
| + | ===== Loading/converting functions ===== | ||
| - | ==== Analysis functions ==== | + | ===== Analysis functions ===== |
analysis/matlab-overview.txt · Last modified: 2018/07/07 10:19 (external edit)
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