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jclub:journalclub [2013/07/08 17:13]
mvdm [Upcoming]
jclub:journalclub [2018/07/07 10:19] (current)
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 +=== Simply list all pages in the jclub namespace ===
 +
 +~~DIR~~
 +
 +The ''​DIR''​ package that serves this list has a number of options and could potentially be configured to also show tags and other interesting properties of these pages (e.g. a description with the paper title)
 +=== Test all tags in use with a count ===
 +
 +{{count>​+}}
 +
 +Can click to list all pages with that tag; more advanced search below
 +=== Search box ===
 +
 +{{searchtags&​nodate&​desc&​sort}}
 +
 +=== Alternative to the DIR route above is to make a table manually ===
 +
 +Like this:
 +
 +^ authors ​ ^ title  ^ year  ^ journal ​    ^ tags   ^ wikipage ​                   ^ external link  ^
 +| Gurney K, Prescott TJ, Redgrave P     | Title   | 2001  | Biol Cybern ​     | how do display tags of this page?  | [[jclub:​gurneyetal2001|link]] ​                    | [[http://​www.ncbi.nlm.nih.gov/​pubmed/​11417052|PubMed]] ​      |
 +| Wu X, Foster DJ    | Title | 2014  | J Neurosci ​ | tags?   | [[jclub:​wufoster2014|link]] ​ | [[http://​www.ncbi.nlm.nih.gov/​pubmed/​24806672|PubMed]] ​     |
 +
 +This would need to be manually updated, so may not be a great option.
 +
 === Upcoming === === Upcoming ===
 +
 +2014-08-29: Gurney K, Prescott TJ, Redgrave P. //Biol Cybern// 2001a/b See page --> [[jclub:​hackathon|jclub:​hackathon]]
 +
    
 Topic: LFP coherence and its application to the striatum Topic: LFP coherence and its application to the striatum
  
-Possible ​papers:+__Possible ​papers:__
  
   * Amygdalar and hippocampal theta rhythm synchronization during fear memory retrieval. Seidenbecher T, Laxmi TR, Stork O, Pape HC. Science. 2003 Aug 8;​301(5634):​846-50.   * Amygdalar and hippocampal theta rhythm synchronization during fear memory retrieval. Seidenbecher T, Laxmi TR, Stork O, Pape HC. Science. 2003 Aug 8;​301(5634):​846-50.
   * The nucleus accumbens: a switchboard for goal-directed behaviors. Gruber AJ, Hussain RJ, O'​Donnell P. PLoS One. 2009;​4(4):​e5062   * The nucleus accumbens: a switchboard for goal-directed behaviors. Gruber AJ, Hussain RJ, O'​Donnell P. PLoS One. 2009;​4(4):​e5062
  
-For reference:+__For reference:__
  
 Brief overview of connectivity concepts and analysis from fMRI (where these ideas are much better developed): http://​mindhive.mit.edu/​node/​58 Brief overview of connectivity concepts and analysis from fMRI (where these ideas are much better developed): http://​mindhive.mit.edu/​node/​58
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   * Measuring Phase Synchrony in Brain Signals. Jean-Philippe Lachaux, Eugenio Rodriguez, Jacques Martinerie, and Francisco J. Varela, http://​www.ma.utexas.edu/​users/​davis/​reu/​ch3/​cwt/​lachaux.pdf   * Measuring Phase Synchrony in Brain Signals. Jean-Philippe Lachaux, Eugenio Rodriguez, Jacques Martinerie, and Francisco J. Varela, http://​www.ma.utexas.edu/​users/​davis/​reu/​ch3/​cwt/​lachaux.pdf
   * THE BRAINWEB: PHASE SYNCHRONIZATION AND LARGE-SCALE INTEGRATION. Francisco Varela*, Jean-Philippe Lachaux*, Eugenio Rodriguez‡ and Jacques Martinerie*. http://​www.nature.com/​nrn/​journal/​v2/​n4/​pdf/​nrn0401_229a.pdf   * THE BRAINWEB: PHASE SYNCHRONIZATION AND LARGE-SCALE INTEGRATION. Francisco Varela*, Jean-Philippe Lachaux*, Eugenio Rodriguez‡ and Jacques Martinerie*. http://​www.nature.com/​nrn/​journal/​v2/​n4/​pdf/​nrn0401_229a.pdf
 +
 +
 +__other possible papers of interest:__
 +  * Tabuchi et al (Hipp, 2000).
 +  * DeCoteau et al (PNAS 2007).
 +  * Tort 2008 et al (PNAS 2008).
 +  * Gutierrez et al (JN 2010).
 +  * Dzirasa et al (JN 2011).
 +  * Cohen et al (JN 2009).
 +  * Cohen et al. (Hum Brain Mapp 2012).
 + 
 +
  
 === Past Journal Clubs === === Past Journal Clubs ===
jclub/journalclub.1373318022.txt.gz · Last modified: 2018/07/07 10:19 (external edit)