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jclub:journalclub [2013/07/08 17:13] mvdm [Upcoming] |
jclub:journalclub [2018/07/07 10:19] (current) |
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+ | === Simply list all pages in the jclub namespace === | ||
+ | |||
+ | ~~DIR~~ | ||
+ | |||
+ | The ''DIR'' package that serves this list has a number of options and could potentially be configured to also show tags and other interesting properties of these pages (e.g. a description with the paper title) | ||
+ | === Test all tags in use with a count === | ||
+ | |||
+ | {{count>+}} | ||
+ | |||
+ | Can click to list all pages with that tag; more advanced search below | ||
+ | === Search box === | ||
+ | |||
+ | {{searchtags&nodate&desc&sort}} | ||
+ | |||
+ | === Alternative to the DIR route above is to make a table manually === | ||
+ | |||
+ | Like this: | ||
+ | |||
+ | ^ authors ^ title ^ year ^ journal ^ tags ^ wikipage ^ external link ^ | ||
+ | | Gurney K, Prescott TJ, Redgrave P | Title | 2001 | Biol Cybern | how do display tags of this page? | [[jclub:gurneyetal2001|link]] | [[http://www.ncbi.nlm.nih.gov/pubmed/11417052|PubMed]] | | ||
+ | | Wu X, Foster DJ | Title | 2014 | J Neurosci | tags? | [[jclub:wufoster2014|link]] | [[http://www.ncbi.nlm.nih.gov/pubmed/24806672|PubMed]] | | ||
+ | |||
+ | This would need to be manually updated, so may not be a great option. | ||
+ | |||
=== Upcoming === | === Upcoming === | ||
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+ | 2014-08-29: Gurney K, Prescott TJ, Redgrave P. //Biol Cybern// 2001a/b See page --> [[jclub:hackathon|jclub:hackathon]] | ||
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Topic: LFP coherence and its application to the striatum | Topic: LFP coherence and its application to the striatum | ||
- | Possible papers: | + | __Possible papers:__ |
* Amygdalar and hippocampal theta rhythm synchronization during fear memory retrieval. Seidenbecher T, Laxmi TR, Stork O, Pape HC. Science. 2003 Aug 8;301(5634):846-50. | * Amygdalar and hippocampal theta rhythm synchronization during fear memory retrieval. Seidenbecher T, Laxmi TR, Stork O, Pape HC. Science. 2003 Aug 8;301(5634):846-50. | ||
* The nucleus accumbens: a switchboard for goal-directed behaviors. Gruber AJ, Hussain RJ, O'Donnell P. PLoS One. 2009;4(4):e5062 | * The nucleus accumbens: a switchboard for goal-directed behaviors. Gruber AJ, Hussain RJ, O'Donnell P. PLoS One. 2009;4(4):e5062 | ||
- | For reference: | + | __For reference:__ |
Brief overview of connectivity concepts and analysis from fMRI (where these ideas are much better developed): http://mindhive.mit.edu/node/58 | Brief overview of connectivity concepts and analysis from fMRI (where these ideas are much better developed): http://mindhive.mit.edu/node/58 | ||
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* Measuring Phase Synchrony in Brain Signals. Jean-Philippe Lachaux, Eugenio Rodriguez, Jacques Martinerie, and Francisco J. Varela, http://www.ma.utexas.edu/users/davis/reu/ch3/cwt/lachaux.pdf | * Measuring Phase Synchrony in Brain Signals. Jean-Philippe Lachaux, Eugenio Rodriguez, Jacques Martinerie, and Francisco J. Varela, http://www.ma.utexas.edu/users/davis/reu/ch3/cwt/lachaux.pdf | ||
* THE BRAINWEB: PHASE SYNCHRONIZATION AND LARGE-SCALE INTEGRATION. Francisco Varela*, Jean-Philippe Lachaux*, Eugenio Rodriguez‡ and Jacques Martinerie*. http://www.nature.com/nrn/journal/v2/n4/pdf/nrn0401_229a.pdf | * THE BRAINWEB: PHASE SYNCHRONIZATION AND LARGE-SCALE INTEGRATION. Francisco Varela*, Jean-Philippe Lachaux*, Eugenio Rodriguez‡ and Jacques Martinerie*. http://www.nature.com/nrn/journal/v2/n4/pdf/nrn0401_229a.pdf | ||
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+ | |||
+ | __other possible papers of interest:__ | ||
+ | * Tabuchi et al (Hipp, 2000). | ||
+ | * DeCoteau et al (PNAS 2007). | ||
+ | * Tort 2008 et al (PNAS 2008). | ||
+ | * Gutierrez et al (JN 2010). | ||
+ | * Dzirasa et al (JN 2011). | ||
+ | * Cohen et al (JN 2009). | ||
+ | * Cohen et al. (Hum Brain Mapp 2012). | ||
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=== Past Journal Clubs === | === Past Journal Clubs === |